Geobacillus sp. JS12: A0V43_17215
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Entry
A0V43_17215 CDS
T04412
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gej
Geobacillus sp. JS12
Pathway
gej03030
DNA replication
gej03410
Base excision repair
gej03420
Nucleotide excision repair
gej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A0V43_17215 (ligA)
03410 Base excision repair
A0V43_17215 (ligA)
03420 Nucleotide excision repair
A0V43_17215 (ligA)
03430 Mismatch repair
A0V43_17215 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gej03032
]
A0V43_17215 (ligA)
03400 DNA repair and recombination proteins [BR:
gej03400
]
A0V43_17215 (ligA)
Enzymes [BR:
gej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A0V43_17215 (ligA)
DNA replication proteins [BR:
gej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A0V43_17215 (ligA)
DNA repair and recombination proteins [BR:
gej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A0V43_17215 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A0V43_17215 (ligA)
MMR (mismatch excision repair)
DNA ligase
A0V43_17215 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A0V43_17215 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
HHH_3
BRCT_2
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AMQ22290
UniProt:
A0A142D5I8
LinkDB
All DBs
Position
3478245..3480257
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSP
TQRIGGPPLEAFRKVTHVVPMMSLANAFGEGDLRDFDRRIRQEVGEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVSLEARGEAFMPKASFLRL
NEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGIESHSEALDY
LQALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGTTAK
SPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALR
CLNPKCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGLE
RMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEEL
MAVPEIGEKMADSIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTVV
LTGKLASMSRNEAKEEIERLGGRITGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDESR
FLQEINRGKR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccgccaacaagccgaacggcgcgcggccgagctgcgtgaactgttgaaccgctac
gggtacgaatattatgtgcttgaccgcccgtccgttccagatgccgagtatgaccggctc
atgcaagagctcatcgccattgaggaacagtatccggaattgaaaacgagcgactcgccg
acccagcgcatcggcggcccgccgcttgaggcgtttcgcaaagtgacgcatgttgttccc
atgatgagtctcgcgaacgcgtttggcgaaggcgacttgcgcgattttgaccgccgcatc
cgccaggaagtcggcgaagcagcgtacgtatgcgagttgaaaatcgacggcctcgccgtc
tcggtccgctatgaagacggctatttcgtgcaaggagcgacgcgcggcgacggaacgaca
ggcgaggacattacagaaaatttgaaaacgatccgctcgctgcctctccgcctgaaagaa
ccggtgtcgcttgaggcgcgcggcgaagcgtttatgccgaaagcgtcgtttttgcgcttg
aatgaggagcgaaaagcccgcggcgaggagctgtttgccaacccgcgcaacgcggcggcc
ggctcgctccgccagctcgacccgaaagtggcggcgtcgcgccagctcgatttgttcgtt
tatggtttggccaatgccgaagagcttggcattgagtcgcacagcgaggcgctcgactac
ttacaggcgcttgggtttaaagtgaatcccgagcggcggcgctgcgccaacatcgatgag
gtgatcgccttcgtcaacgagtggcacgaaaaacggccgcagctgccgtacgaaatcgac
ggcatcgtcattaaagtcgactcgttcgcccaacagcgggagcttggtacgacggcaaaa
agcccgcgctgggcgatcgcctacaaattcccagccgaggaagtggtgacgacgctcatc
ggcattgaggtgaacgtcggccgcacgggcgtcgtcacgccgaccgcgattcttgagccg
gtccgcgtcgctggcacgaccgtgcagcgcgccactcttcataatgaagattttatacgg
gaaaaagacattcgcatcggcgatgcggtcatcattaaaaaagcgggcgacatcatcccg
gaagtggtcggcgtcgtcgtcgaccggcgcgacggggatgaaacgccgtttgtcatgccg
acgcattgtccggaatgcgaaagcgagctcgtccgcctggatggagaagtggcgctccgt
tgcttaaacccgaaatgcccggcccagctgcgcgaacggcttatccattttgcctcaaga
gcagcgatgaacattgaagggttgggcgaaaaagtcgtcacccaactgtttaacgctggc
ctcgtccacgatgtcgccgatttgtaccggctgacgaaagaacagctcatcggtttggaa
cggatgggcgaaaagtcagcaaccaacttgcttgcagcgattgaggcatcgaagcaaaac
tcgctcgaacggctgctgttcggccttggcatccgctatgttggagcgaaggcggcccaa
cttttggctgagcattttgaaacgatggagcggctggaaaaagcgacgaaagaggaattg
atggccgtgccggaaattggcgagaaaatggcggactcgatcatcgccttcttttcccag
ccagaagcggccgagctactccatgagctgcggctttacggcgtcaacatggcatacaaa
gggccgaagcgggcggctgaagcgcctgctgactccgccttcgccggcaaaacggtcgtc
ttgaccggcaaactcgcgtcgatgtcgcgcaatgaggcaaaggaagagattgaacggctc
ggcgggcgcatcaccggcagcgtcagccgcagcaccgacatcgtcatcgccggtgaggac
gccggatcgaagctggagaaagcccagcagcttggcattgagatttgggacgaatcacga
tttttgcaagagatcaacagggggaaacgatga
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integrated database retrieval system
