Gelria sp. Kuro-4: kuro4_21990
Help
Entry
kuro4_21990 CDS
T07432
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gek
Gelria sp. Kuro-4
Pathway
gek03030
DNA replication
gek03410
Base excision repair
gek03420
Nucleotide excision repair
gek03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
kuro4_21990 (ligA)
03410 Base excision repair
kuro4_21990 (ligA)
03420 Nucleotide excision repair
kuro4_21990 (ligA)
03430 Mismatch repair
kuro4_21990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gek03032
]
kuro4_21990 (ligA)
03400 DNA repair and recombination proteins [BR:
gek03400
]
kuro4_21990 (ligA)
Enzymes [BR:
gek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
kuro4_21990 (ligA)
DNA replication proteins [BR:
gek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
kuro4_21990 (ligA)
DNA repair and recombination proteins [BR:
gek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
kuro4_21990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
kuro4_21990 (ligA)
MMR (mismatch excision repair)
DNA ligase
kuro4_21990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
kuro4_21990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_8
Mustang
RNA_pol_A_CTD
5_3_exonuc
Zn_ribbon_NUD
BRCT_2
RUBY_RBDX
E1-E2_ATPase
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
BCV25426
LinkDB
All DBs
Position
complement(2215411..2217429)
Genome browser
AA seq
672 aa
AA seq
DB search
MAEDVTARAAQLRRQLEYHNWRYYVLDDPVITDSQYDRLLRELMRLEEEHPELKTPDSPT
QRVGGAPRPEFGTVVHRVPLFSLANAYNEEELRDFDRRIRDLAGDAKVEYVVELKIDGLA
VSLTYENGVFVQGATRGDGVTGEDITANLRTVRSLPLRLHPEAGAPPLVEVRGEVFMPKQ
AFLELNARREEEGEPLFANPRNAAAGSLRQLDPKVTAARSLDTFLYGLGAAEGLEPATHW
ELLEFLRRAGFKVNPHIRMAANIEEAIAYCLSWRERRAELPYPIDGLVLKVNSLELQRAL
GTTAKSPRWAIAYKFPAEQGETRLKEIIVSVGRTGVLTPTAVFDPPVHLAGTTVSRAALH
NEEIIHARDIRVGDIVLVEKAGDIIPEVVASRPERRTGKETVFHMPQKCPACGAEVVRLP
GEVAHRCPNVSCPARLRESLLHFGSRAALDIDGLGPALINLLLERGLIKDVADLYHLQAE
ELAELPRFGAKSAANLLAALAASKTRSWDRLLYALGIRYVGATVAKTLAAHFPDLRSLMA
AGREELTAIPGVGEKVAASLVDFFAEPRNRETIERLAAAGLNMSGRRRERAGPLSGKTFV
LTGTLAGFTRSEAQAAIEERGGRVTGSVSRATDYVVAGEKPGSKLDKARALGVPVLSEEE
FKKLLEERLVQA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagacgttaccgcacgggcggcgcagctgcgccgccagctggaataccacaac
tggcgctactatgttcttgatgaccccgtgatcactgacagccaatacgaccggctgctg
cgcgagctcatgcggctggaggaagaacaccccgagcttaagacgcctgattcgcccacg
cagcgcgtgggcggcgcaccgcggcccgagttcggcacagtggtgcaccgcgtgccgctc
tttagcctggctaacgcctacaatgaagaggaactgcgcgatttcgaccgccgcatccgc
gacctggcgggcgacgccaaggtggagtacgtggtggagctcaagatcgacggcctggcc
gtctcgctcacctacgaaaacggcgtttttgtccagggggcgacgcgcggcgacggtgtg
acgggggaggatatcaccgccaacctgcgcaccgtgcgctccctgccgctgcgcctgcac
cccgaggccggggcgccgccgctggttgaggtgcggggcgaggtttttatgcccaaacag
gcctttttggaactcaacgcccggcgcgaagaggagggcgagcccctcttcgccaacccg
cgcaacgccgccgccggctccctgcgccagctcgaccccaaggtgacggcggcgcgttcc
ctcgacaccttcctctacggcctgggggcggcggagggcctggagccggccacccactgg
gaactcctggagttcctgcgccgggccgggttcaaggtgaacccacatatccgcatggcc
gcgaacatagaggaagccatcgcctactgcctgagctggcgcgagcggcgggcggagctg
ccctaccccatcgacggcctggtgctcaaggtgaacagtctggagctgcagcgcgctctg
gggaccaccgccaagagcccgcgctgggccatcgcctacaagttccccgccgagcagggg
gagacccgccttaaagagatcatcgtcagcgtaggccgcacgggggtccttacgcctacg
gcggtgttcgacccgccggtgcacctggccgggaccacggtgagccgtgcggcgctgcac
aacgaagagatcatccacgcccgcgacatccgagtgggcgatattgttctagtggagaag
gccggggacatcatccccgaggtggtggcctcccggccggagcggcgcacgggaaaggaa
actgtctttcacatgccccaaaagtgccccgcctgcggggcggaggtggtgcggctcccg
ggcgaagtggcacaccgctgcccgaacgtctcctgcccggcgcggctgcgcgagagcctc
ctgcacttcggttcccgcgccgccctggacatcgacggcctggggccggccctgatcaac
ctgctcctggagcgcggtttgataaaagacgtggccgacctctaccaccttcaagccgag
gaactggccgagctgccgcggttcggcgcgaagtccgccgccaacctgctggcggcgctg
gccgcaagtaagacccgcagctgggaccggctgctctatgccctaggcatccggtacgtg
ggggcaaccgtggccaagacgctggcggcgcacttccccgacctgcgctcgctcatggcc
gccggccgggaggaactcacggccatccccggcgtcggggagaaggtggcggccagcctg
gtggatttcttcgctgagccgcgcaaccgggagaccatcgagcgcctggcggcggcgggg
ctcaacatgagcggccggcggcgggagcgggcggggccgctgagcggcaagacgttcgtt
ctcaccggcaccctggccggctttacccggtccgaggcccaggcagccatcgaggagcgg
ggcggccgcgtgacaggcagtgtcagccgcgccacggattacgtggtggcgggggagaag
ccgggctccaagctggacaaggcccgggcgctgggcgtcccggtgctcagcgaggaggag
tttaagaagctactcgaagaaaggttggtgcaggcatga
DBGET
integrated database retrieval system
