Geotalea daltonii: Geob_1970
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Entry
Geob_1970 CDS
T00846
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
geo
Geotalea daltonii
Pathway
geo03030
DNA replication
geo03410
Base excision repair
geo03420
Nucleotide excision repair
geo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
geo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Geob_1970 (ligA)
03410 Base excision repair
Geob_1970 (ligA)
03420 Nucleotide excision repair
Geob_1970 (ligA)
03430 Mismatch repair
Geob_1970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
geo03032
]
Geob_1970 (ligA)
03400 DNA repair and recombination proteins [BR:
geo03400
]
Geob_1970 (ligA)
Enzymes [BR:
geo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Geob_1970 (ligA)
DNA replication proteins [BR:
geo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Geob_1970 (ligA)
DNA repair and recombination proteins [BR:
geo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Geob_1970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Geob_1970 (ligA)
MMR (mismatch excision repair)
DNA ligase
Geob_1970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Geob_1970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACM20327
UniProt:
B9M861
LinkDB
All DBs
Position
complement(2210744..2212753)
Genome browser
AA seq
669 aa
AA seq
DB search
MDRTAAQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTADSP
TQRVGAAPLDKFNQVSHRLPMLSLENAFNEGEMRDFDERIKRYLGLPMAKEIEYVCEPKM
DGLAVELIYEEGSLTFGSTRGDGYVGEDVTQNLKTVKSIPLRLHCSPPPSLVEVRGEVYL
GLAPFQKLNMDREEAGLPPFANPRNAAAGSLRQLDPRITARRPLSIFCYAPGLVEGYEFT
SQSQMLATLPQWGLPVNPLIKKVAGIDAVLAYYREIGETRESLPYEIDGVVIKVDSFDLQ
RDLGEKTRSPRWAIAWKFPPRQAVTVVEDIVPQVGRTGVITPVAHLKPVEVSGVMVSRAT
LHNWEEMEKKDIRKGDTVVVERAGDVIPAVVKVMTEKRLEGAELLAVPAACPECGSEIVK
IPGEVAIRCLGLTCPAQIRETIIHFASRHAMDIEGMGDKYVEQLLRLELVKTVADLYYLT
KKDFMRFERMGDKLAENLLNAIEASKHRELSRFIFALGIRHVGEHTAKLLASAFGSVEHL
EKATEEELLSIREVGPQVAQSVRTFFRNPANREVIERMFAAGVRPAVEEKRLGGRFTGKT
FVFTGALTRFTRDDAKNMVENEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVNVLTE
DEFLKMLEG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggacagaacagccgcacagcttcgaatacaggagctgcaccgggaaatcaaccgtcat
aattacctctactatgtggaagaccggcccgaaatcaccgatgccgagtatgatctgctc
ctgcgcgaactgcaacagctggaaaaggaattcccggaccttgtcaccgcggactccccc
acccagcgggtcggggcggcccccctggataaattcaaccaggtaagccaccgcctgccg
atgctctccctagaaaacgcattcaatgagggagagatgcgtgatttcgacgagcgcatc
aagcgttacctgggcctacccatggcaaaggagattgagtacgtatgcgagccaaagatg
gatgggctggcggtggagcttatctatgaggaaggctccctcacgttcgggtccacgcgc
ggcgacggctatgtgggagaggatgtcacccagaacctgaaaacggtcaagtcgatcccc
ctgcgcctccattgctcgcccccgcccagcctggtcgaggtcaggggcgaggtttacctg
gggctggccccctttcagaaactgaacatggatcgggaagaagccggccttccccccttt
gccaatccgcgtaacgctgctgcgggctccctgcgccagttggacccacggattaccgcc
aggcggcccctctccatcttctgctatgcgccgggtcttgttgaaggatatgaatttacc
tcccaaagccaaatgctcgccaccctgccccaatgggggctgcccgtaaaccctttgatc
aaaaaagttgccggtatcgacgctgtcctggcctattaccgggaaataggcgagacacgg
gagtcgctcccctatgaaattgacggtgtggtgatcaaggtggactccttcgatctgcag
cgcgatctgggggaaaaaacccgctctccccgctgggccattgcctggaaatttccgccg
cgacaagcggtaacggtcgtcgaagatatcgttccccaggttgggcgcaccggtgtcatc
acccccgttgcccatctcaagccggttgaggtttcgggggtgatggtgtccagggcaacc
ctccacaattgggaagaaatggagaaaaaagacatccgtaaaggagatacggtggtcgtg
gagcgagccggcgatgtcattccggccgtggtcaaggtcatgacagagaagcggctggag
ggtgcggagcttttggcggttcctgctgcctgtcccgagtgcggttcggagatcgtcaag
ataccgggagaagtggcaatccgctgcctggggctcacctgcccggcccagatcagggag
accatcatccatttcgcctcgcgccatgccatggatatagaggggatgggtgacaagtac
gtggagcagctgctgcggcttgagctggttaagaccgtcgccgacctctactatctgaca
aagaaagacttcatgcgtttcgagcgcatgggggacaaactggcggagaacctgcttaat
gccatagaggccagcaagcaccgggagctgtcacgcttcatcttcgccctgggcatcagg
cacgttggggagcacacggcaaagcttctggccagtgccttcggcagcgtcgagcacctg
gaaaaggcgacggaagaggagctgctttccatccgcgaagtcggcccccaggtggcccag
agcgtccgcacctttttccgcaacccggccaatcgggaggtgatcgagcgcatgtttgcc
gcaggagtcagaccggctgtggaagaaaaaaggctgggaggacgctttaccggcaagacc
ttcgtcttcaccggcgccctcacccgcttcacccgtgatgatgcaaaaaacatggtagaa
aatgaaggtgggcacgccgccggctcggtctcgaaaaagactgactatgtggttgccgga
gccgaggcgggaagcaaactggacaaggcccggcagcttggtgtgaatgtgctgacggaa
gatgaattcttgaagatgctggagggatga
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