Geothrix sp. PMB-07: Q9293_01460
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Entry
Q9293_01460 CDS
T09655
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
gep
Geothrix sp. PMB-07
Pathway
gep03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Q9293_01460 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gep03400
]
Q9293_01460 (nth)
Enzymes [BR:
gep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Q9293_01460 (nth)
DNA repair and recombination proteins [BR:
gep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Q9293_01460 (nth)
Prokaryotic type
Q9293_01460 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
Peripla_BP_2
HHH
RecR_HhH
EndIII_4Fe-2S
Motif
Other DBs
NCBI-ProteinID:
WLT31999
LinkDB
All DBs
Position
complement(336435..337889)
Genome browser
AA seq
484 aa
AA seq
DB search
MSPAKSKSSLKTGDLQRLLRAAYPDARCALDHQDPFQLVVATILSAQCTDARVNLTTPAL
FARFPDAASLANARVEEIEALIRSTGFYHNKAKNLLGLGQALMARHGGKVPSDPAELGAL
PGVGQKTANVVLANAFGVPALAVDTHIFRVARRLGLSKATTPEKVEADLCRLFPREDWIE
LHHQLIFHGRRVCDARRPDCAGCSLLDLCPTGLGKIKDPHTGVKLDVVAPHLPTTAFTQQ
TPSTDGPQRIVSLVPSVTELLVQWGLGARLVGRTRYCIEPRWIRNTVPTVGGTKDPDLER
IRDLAPDLVILERDENPKAVAEALTTLGLPWLALEIRTVKDCIAGLRQLGERLGVPDLGE
ARAAALEARLKGRRRKGARAIAMIWKDPWMTSGPDTYIGDLLRQGGLTPIGPDRYPVLSD
EELEQLAPQVILLPTEPYRFNRRHQADLKKRFPKALVHLVDGQTLTWYLSRTEEGLDLVE
SLHG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagcccagccaagtccaagtccagcctcaagacgggcgatctccagcggctgctgcgg
gccgcctaccccgacgcccgctgcgccctggatcaccaggatcccttccagctggtggtg
gccaccatcctcagcgcccagtgcacggatgcccgggtgaacctcaccaccccggccctg
ttcgcccgcttcccggatgcggccagcctcgcgaatgcccgggtggaggagatcgaagcc
ctcatccgctccacaggcttctaccacaacaaggccaagaacctgctcggcctgggccag
gcgctgatggcgcggcacggcggcaaagtcccctccgatcccgccgaactgggtgccctc
ccgggcgtcggtcagaagaccgcgaacgtggtgctggccaacgcctttggtgtgcccgcc
ttggccgtcgacacccacatcttccgcgtagcacggcgcctgggcctgtccaaggccacc
acccccgagaaggtggaagcggacctctgccgcctctttccgcgcgaggactggatcgag
ctccaccatcagctcatcttccacggccgccgcgtctgcgatgcccgccgcccagactgc
gctggctgctccctgctcgacctctgtcccacgggattgggcaaaatcaaagatccgcac
acaggcgtgaagctcgacgtggtcgcgccgcatctgcccaccaccgcgttcacgcagcag
acgcccagcaccgacggccctcagcgcatcgtgagcctggtgccctcggttacggaactg
ctggtgcagtggggcctcggcgcccgcctggtgggtcgcacccgctactgcatcgagccg
cgctggatccgcaacaccgtgcccaccgtgggcggaaccaaagatcccgacctggagcgc
atccgcgatctggcgccggatctggtgatccttgaacgggacgagaaccccaaggccgtg
gccgaggcgctgaccaccctgggcctgccctggctggccctggaaatccgcaccgtgaag
gactgcatcgcaggcctgcgccagctcggcgaacgcctcggcgtacctgatctgggtgaa
gcccgcgctgccgcattggaggctcgcctgaaggggcgccgccgcaagggcgcccgggcc
atcgccatgatctggaaggatccctggatgacctcgggcccggatacctacatcggcgat
ctgctgcgccagggtggactcacgcccatcggccccgaccgctatcccgtgctgtcggac
gaggaactggaacagctggcgccgcaggtgatcctcctgcccacggagccctaccgcttc
aaccgccgccaccaggccgacctgaagaagcgcttccccaaggccctcgtccacctggtg
gatgggcagaccctgacctggtatctgagccgcacggaagaagggttggatttggtggag
agcctacacgggtaa
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