Gemmata sp. SH-PL17: VT84_00065 Help Entry VT84_00065        CDS       T04358                                  Symbol ligA_1 Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism ges  Gemmata sp. SH-PL17 Pathway ges03030   DNA replication ges03410   Base excision repair ges03420   Nucleotide excision repair ges03430   Mismatch repair Brite KEGG Orthology (KO) [BR:ges00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     VT84_00065 (ligA_1)    03410 Base excision repair     VT84_00065 (ligA_1)    03420 Nucleotide excision repair     VT84_00065 (ligA_1)    03430 Mismatch repair     VT84_00065 (ligA_1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:ges03032]     VT84_00065 (ligA_1)    03400 DNA repair and recombination proteins [BR:ges03400]     VT84_00065 (ligA_1) Enzymes [BR:ges01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      VT84_00065 (ligA_1) DNA replication proteins [BR:ges03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      VT84_00065 (ligA_1) DNA repair and recombination proteins [BR:ges03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      VT84_00065 (ligA_1)    NER (nucleotide excision repair)     GGR (global genome repair) factors      VT84_00065 (ligA_1)    MMR (mismatch excision repair)     DNA ligase      VT84_00065 (ligA_1)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       VT84_00065 (ligA_1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB BRCT HHH_5 HHH_2 PTCB-BRCT HHH DNA_ligase_ZBD RNA_ligase zf-C4_Topoisom Cu_bind_like Motif Other DBs NCBI-ProteinID:  AMV22771 UniProt:  A0A142X794 LinkDB All DBs Position 10638..12683 Genome browser AA seq 681 aa AA seqDB search MAKTTTASPAAPADRAAELRKQLDHHNYLYYVEAAPVISDREFDKLLQELANIEKAHPEL VTPDSPTQRVGGAPIPGFKQVTHKVPMLSIENSYDEGDLRKFDADVKKALGASAVVEYVV ELKIDGVSMSITYENGKLAFAATRGSGSVGDDVTHNVKTIAAIPLKLNTNNPPAIFEARG EVYMTRSELARINAEQTKNKQEPYKNARNLSAGTLKLLDPRECAKRKLSMFAYGSGAIDG LVIKKQSEMLAKLKEFGFPVNPHERLCASIDEVIAYCKEWDTKRKELPYDTDGIVVKVND WAQRERIGYTAKVPKWARAFKFEAEQGTTKLGAVVFHIGKFGELTPVATFDPPVQLAGTT VTHASMHNASWVAEMDVRIGDTVVVEKKGEIIPQVVDVIKADRKGTETIITWPENCPECG GPVVKQESASSYNFICSNPESCSGGMWKRLEGYARKTRMEIDGLGREVAIQLVESGLVKS VADLYRLTKKQLLALEKFADTKAQKLLDGIAASKDRGLARLLPALAIYSVGEKMADDLVE EFPDIDLIIAAKPEDLARVKGWGPERAKYLRAYFDGENGRKLIAELKELGIKMTHDKKAA PVGGLPLAGKTIVVTGTLVNYDRVGIETAIKDAGGKASGSVSKKTDFLLVGDKPGSKHDK AKELGVKIINEDEFRQIVGAG NT seq 2046 nt NT seq  +upstreamnt  +downstreamnt gtggccaaaaccactaccgcttcgcccgccgcgcccgcggaccgggcggccgaactccgc aagcaactcgatcaccacaactacctgtactacgtcgaagccgcgccggtcatttcggac cgcgagttcgacaagttgctccaagaactcgccaacatcgagaaggcccacccggaactc gtcaccccggacagcccgacgcagcgcgtcggcggggcgccgatccccgggttcaagcaa gtcacgcacaaggtgccgatgctgtctatcgagaacagttacgacgaaggcgacttgcgg aagttcgacgcggacgtgaagaaagcactcggggccagtgcggttgtggaatacgtcgtg gaactgaagatcgacggcgtgtcgatgtcgatcacttacgagaacggcaagctcgcgttc gcggccacgcgcgggagcgggagcgtgggcgacgacgtgacgcacaacgtcaaaacgatc gccgctattccgctgaagctcaacaccaacaacccgccggcgatcttcgaggcgcgcggt gaagtgtacatgacccgcagcgaactggcccggatcaacgcggaacaaaccaagaacaag caggagccgtacaagaacgctcgtaacctcagcgcggggacgctcaagctgctcgatccc cgcgagtgtgccaagcggaagctcagcatgttcgcctacgggtctggcgcgatcgacggg ctggtcatcaagaagcagtcggagatgctcgcgaagctcaaggagttcgggttccccgta aacccgcacgagcgattgtgcgcgagcattgatgaggtgatcgcgtactgcaaggagtgg gacacgaagcggaaggagctgccctacgacaccgacggcatcgtggtgaaggtgaacgac tgggcgcagcgcgagcgcatcgggtacacggcgaaagtgccgaagtgggcgcgagcgttc aagttcgaggccgaacaggggacgacgaagctcggcgcggtcgtgttccacatcggcaag ttcggcgaactgacgccggttgccacgttcgacccgccggtgcaactggccggcaccacg gtcacgcacgcgagcatgcacaacgcctcgtgggtcgcggagatggacgtccggatcggc gacacggtggtggtcgagaagaagggcgagatcatcccgcaagttgtggacgtcatcaaa gcggaccgcaagggtacagaaacgatcattacgtggccggagaactgcccggagtgcggc gggccggtcgtcaaacaggagtcggcgagcagttacaacttcatttgcagcaaccccgag tcgtgttccgggggcatgtggaagcgcctggaagggtacgcgcgcaagacgcgcatggag atcgacggactcgggcgcgaggtcgcgattcagctcgtcgagtccggtctcgtgaagtcg gtcgcggacctctaccggctgaccaagaagcaactcctcgctctggagaaattcgcggac acgaaggcgcagaagctactcgacgggatcgctgcgagtaaggaccgcgggctggcccgg ttgctccctgcactggcgatctacagcgttggtgagaagatggccgacgacctcgtcgaa gagttcccggacatcgatctcattatcgccgcaaagcccgaggatctggcgcgtgtaaag gggtggggaccggaacgagcgaagtatctgcgtgcgtatttcgacggcgagaatggtcgg aagctcatcgcggagctaaaagaactcggcatcaagatgacgcacgacaagaaggccgcg ccggtcggcgggcttcccctcgcgggcaagacgatcgtggtgacgggaacgctcgtgaat tacgatcgcgtcggtatcgagaccgcgatcaaggacgcgggcgggaaggcgagcgggagt gtgtcgaagaagacggacttcctgttggtcggcgacaagcccggtagcaaacacgacaaa gcgaaggaactcggtgtgaagatcattaatgaggacgagttccgccagatcgtcggcgcg ggctaa

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