Gemmata sp. SH-PL17: VT84_17680
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Entry
VT84_17680 CDS
T04358
Symbol
bepD_3
Name
(GenBank) Efflux pump periplasmic linker BepD precursor
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
ges
Gemmata sp. SH-PL17
Pathway
ges01501
beta-Lactam resistance
ges01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
ges00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
VT84_17680 (bepD_3)
01503 Cationic antimicrobial peptide (CAMP) resistance
VT84_17680 (bepD_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ges03036
]
VT84_17680 (bepD_3)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ges02000
]
VT84_17680 (bepD_3)
01504 Antimicrobial resistance genes [BR:
ges01504
]
VT84_17680 (bepD_3)
Chromosome and associated proteins [BR:
ges03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
VT84_17680 (bepD_3)
Transporters [BR:
ges02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
VT84_17680 (bepD_3)
Antimicrobial resistance genes [BR:
ges01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
VT84_17680 (bepD_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl_2
OB_ChsH2_C
Snapin_Pallidin
Motif
Other DBs
NCBI-ProteinID:
AMV26233
UniProt:
A0A142XGU9
LinkDB
All DBs
Position
4098291..4099637
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AA seq
448 aa
AA seq
DB search
MRRDLSFVLTAALGLTPAVGCNQKSTPPGGAAPAPATPITVIKPERRAIKRVIEQPGTAT
AFEETVLHAKLPGFVGRIADDPEKANRPPHDRQTDIGSRVKAGQILAVLTMPELDEEWKQ
KVALVKQAEAEVVQSEKAAEAMKAGVTAAESLVTVAEAGVDRSQALYERWQKEVDRIAKL
LGNGVGDSQTLDETKNQLRAAEAGQKEATARVTAARAAVKKAVADEAKVVADVVGARAKL
EVARAEVNRLDALRSYTAIKAPFDGVVTRRSVNTGDLVSGTEKTGLFAVARTDPVRVVVN
VPEADAGQVAVGQDVRLALQGPEQVGKVVRTSWSLEPGSRTLRTEIDLPNEVGALRPGMF
VHAKLTIELPAAWSVPAAAVGKSGDDAVMYAVEGGKAARVTVQLIKGDGQFTQVRRYKKS
AATDWTDVTGSEQFASPAAALTDGQAIP
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgtgacctgtcgttcgttctcactgccgcactcggcctcacgccagccgtcggg
tgcaatcagaaatcaactcctcccgggggagcagctccggcccccgcgacaccgatcacg
gtcatcaaaccggagcggcgcgcgatcaaacgggtcatcgagcagcccggcacggccacg
gcgttcgaggaaacggtcctgcacgcgaagctccccggcttcgtcgggaggatcgcggac
gacccggagaaagcgaaccgcccgccccacgaccggcaaaccgatatcgggagccgcgtc
aaggcggggcagattctggccgtgttgaccatgccggaactggacgaagagtggaagcaa
aaggtcgccctcgtcaaacaggccgaagcagaagtggtgcagtccgagaaagcggcagag
gcgatgaaggccggtgtcacggccgcagaatcgctggtcaccgttgccgaagcgggggtg
gatcgctcgcaggctctgtacgagcgctggcaaaaggaagtcgaccggatcgcaaaatta
ctcggcaacggggtcggcgacagccagacgctcgacgagacgaagaaccaactccgggcc
gcggaagccggacagaaggaagcgaccgcgcgcgtcactgcggcacgggccgcggtgaaa
aaggcagtagccgacgaagcaaaggtggtggccgatgtggtcggcgcgagagcgaaactg
gaagtcgccagagcagaggttaaccgattggacgcactccgcagctacacggcgatcaag
gccccgttcgacggggtagtgacccgccggtcggtcaacaccggtgacttggtgagcggg
accgagaagaccggtctatttgctgtagcccgaaccgatccggtgcgagtggtggtaaac
gtacccgaggccgacgccggacaggtcgcagtcggtcaggatgtgcgtttggcgctccag
ggaccggagcaggtggggaaagtggtccgcacgtcttggtcactggagccgggatcgcgc
acgctgcgaaccgagatcgacctccccaatgaagtaggagcactgcggccgggaatgttc
gtccacgcgaaactgacgatcgaactcccggccgcgtggtcggtcccggcggcagcggtc
ggcaaatccggcgacgatgcggtcatgtacgcggtcgaaggtggaaaagcggcccgcgta
accgtccaactcattaagggcgacggtcagttcacccaagttcgccggtacaaaaagtcc
gcggccaccgactggaccgacgtaaccggctccgaacagttcgcgtccccggccgcggcc
ctcacggacgggcaggcgataccgtaa
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