Geothrix sp. L227-G1: QOZ81_000291
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Entry
QOZ81_000291 CDS
T09988
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
get
Geothrix sp. L227-G1
Pathway
get03030
DNA replication
get03410
Base excision repair
get03420
Nucleotide excision repair
get03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
get00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QOZ81_000291 (ligA)
03410 Base excision repair
QOZ81_000291 (ligA)
03420 Nucleotide excision repair
QOZ81_000291 (ligA)
03430 Mismatch repair
QOZ81_000291 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
get03032
]
QOZ81_000291 (ligA)
03400 DNA repair and recombination proteins [BR:
get03400
]
QOZ81_000291 (ligA)
Enzymes [BR:
get01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QOZ81_000291 (ligA)
DNA replication proteins [BR:
get03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QOZ81_000291 (ligA)
DNA repair and recombination proteins [BR:
get03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QOZ81_000291 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QOZ81_000291 (ligA)
MMR (mismatch excision repair)
DNA ligase
QOZ81_000291 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QOZ81_000291 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
PTCB-BRCT
HHH_5
DNA_ligase_ZBD
HHH
Motif
Other DBs
NCBI-ProteinID:
WIL21045
LinkDB
All DBs
Position
346529..348532
Genome browser
AA seq
667 aa
AA seq
DB search
MTDLRQRMKDLADQVRMHRYRYYVLDQPTVSDAEYDALEKELRAIEEEHPELADANSPTR
RVGAPPVDAFEKRRHGQPMLSLDNAYSEAELREWEVKWRKLAPEAGPRYAAELKVDGLSL
SLRYEGRELVEALTRGDGETGELVTENARTIADIPLRLPAEAPVRLEVRGEVFLSRKRWE
ELNRQRDARGEARFANPRNAASGTMKLLDSREVAARGLSFLPWQVLWSEGGEWDHAQSMA
LLGAWGFGVMPAHGEGDLAGVLSFIAEQAEARLRLPFDTDGVVLKVLDPALQQRLGATDR
VPRWAIAFKFPATQVTTTVLGITWQVGRSGKLTPVAELEAVEVAGSTVRRATLHNADELA
RLGLKVGHRVFIEKGGEVIPKVVALVPGEEGRDLPATLIPATCPECAGEVGKTDDAEVAI
RCLNPECPAKLAARLLHFGGRSALDIEGLGEALVEQVVASKRFEQPWELFSLLQEPRLGL
AYVSGLDRMAEKSAQNLMQALDEARMKPLARWIHALGIPMVGARTAELLAEAYPSLDLLW
VADEQKLQAVEEVGPKVAAALRAFVALHPELPARLAELGVRPAPPAPRDLSGLPLSGEVA
VVTGTLPSLSREAAEALLKRLGAKVTGSVSPKTTLLLAGEKAGSKLAKAETLGIPVRDEA
WLRGLEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacctgcggcagcggatgaaggacctggcggaccaggtgcgcatgcaccggtac
cgctactacgtgctggaccagcccacggtctccgacgctgaatacgacgcactggagaag
gaactgcgcgccatcgaggaggaacatcccgagctggccgacgcgaacagcccgacccgg
cgcgtgggcgcgccgccggtggatgccttcgagaagcgccgtcatggccagcccatgctc
agtctcgacaacgcctattcggaagccgagttgcgcgagtgggaggtgaagtggcgcaag
ctggcgccggaggccgggccgcgctatgcggccgagctcaaagtggatggcctgtccctc
tcgctgcgctacgaaggacgcgagctggtggaggccctcacccggggcgacggcgagacc
ggtgagctggtgaccgagaacgcgcggaccatcgcggacattccattgcggctgcccgcg
gaggcgcccgtgcggctggaggtgcggggcgaggtcttcctgtcccgcaagcgctgggag
gagctgaaccgccagcgggatgcccgcggcgaggcgcgcttcgccaacccgcgcaacgcc
gccagcggcaccatgaagctgctggacagccgcgaggtcgccgcccgcggcctgtccttc
ctgccttggcaggtcctctggagcgaaggcggggaatgggatcacgcgcagtccatggct
ctgctgggcgcatggggtttcggcgtgatgccggcccatggcgagggcgacctggcgggc
gtgctgtcgttcatcgcggagcaggccgaagcccggctccggctgcccttcgatacggat
ggcgtggtgctgaaggtgctggatcccgccctgcagcagcgcctgggggccacggaccgc
gtaccccggtgggccatcgcgttcaagttccccgccacccaggtgaccaccacggtgctg
ggcatcacctggcaggtggggcgcagcggcaagctcacgccggtggccgagctggaggcg
gtggaagtggcgggttctacggtgcgccgggccaccctgcacaacgccgacgagctggcg
cgcctgggcctgaaggtcggacatcgcgtgttcatcgagaagggcggcgaggtcattccc
aaggtggtggcgctggtgccgggcgaagagggccgggacctgccggcgacgctgattccc
gcgacatgccccgaatgcgccggcgaggtcggcaagacggatgatgcagaggtggccatc
cgctgcctcaatcccgagtgtcccgccaagctggcggcgcggctgctgcacttcggcggc
cgctccgccctggacatcgagggcctgggcgaggccctggtggagcaggtggtggcatcc
aaacgcttcgaacagccttgggagctgttcagcctgctgcaggaaccccggctggggctg
gcctatgtctccggcctggaccgcatggccgagaagtccgcccagaacctgatgcaggcc
ctggacgaggcccgcatgaaacccctggcccgctggatccacgcattgggcatccccatg
gtgggcgcccgcaccgcggaactgctggccgaggcctacccctcgctggatctgctgtgg
gtagccgatgaacagaagctgcaggccgtggaggaagtgggaccgaaggtcgcggccgcc
ctgcgcgctttcgtggccctgcatccggaactgccggcgcggctcgcggagctgggcgtg
cggcccgcgccgcccgcgccccgggacttgtcggggctgccgctgtccggcgaggtcgcg
gtggtcaccggcacgctgccttccctgtcgcgggaggcggcggaggccctgctgaagcgg
ctgggcgccaaagtcacgggcagcgtgtcgccgaagaccaccctgctgttggccggcgag
aaggccggatccaagctggccaaggcagagaccctgggcatccccgtgcgcgacgaggcc
tggctgcgggggctggaaggctga
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