Geobacter sp. SVR: GSVR_37650
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Entry
GSVR_37650 CDS
T10318
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gev Geobacter sp. SVR
Pathway
gev03030
DNA replication
gev03410
Base excision repair
gev03420
Nucleotide excision repair
gev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GSVR_37650 (ligA)
03410 Base excision repair
GSVR_37650 (ligA)
03420 Nucleotide excision repair
GSVR_37650 (ligA)
03430 Mismatch repair
GSVR_37650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gev03032
]
GSVR_37650 (ligA)
03400 DNA repair and recombination proteins [BR:
gev03400
]
GSVR_37650 (ligA)
Enzymes [BR:
gev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GSVR_37650 (ligA)
DNA replication proteins [BR:
gev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GSVR_37650 (ligA)
DNA repair and recombination proteins [BR:
gev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GSVR_37650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GSVR_37650 (ligA)
MMR (mismatch excision repair)
DNA ligase
GSVR_37650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GSVR_37650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
BCS55457
LinkDB
All DBs
Position
3981689..3983743
Genome browser
AA seq
684 aa
AA seq
DB search
MQLPLLDTADPRENARKRIEELRRLLEHHNRLYYVLDAPVITDAEYDELFRELQHLEKQF
PDLITPDSPTQRVGGAPLAKFSAMVHRLPMLSLENAITEADITDFDLRIKRMLGIPPGHP
IGYFCEPKMDGVAVELVYTDGLLTAASTRGDGFTGEEVTENVRTIRSLPLRLTGDNIPRL
LEVRGEVFLSLEAFQRINREKEENGEPPFANPRNAAAGSLRQLDPRITARRPLSIFCYGP
GVIEGTGFDSQQAFFSAISGWGLPVNPLVRGETGIEGAVDFYREILAQRESLPYEIDGAV
LKVDSFELQRELGVKSRSPRWALACKFPPRQAVTLLEDIQLSVGRTGVITPVAQLRPVEV
SGVTVSRATLHNWDEIALKDIRIGDHVLVERAGDVIPAVVKVLTEKRTGQERQLDPPESC
PECGSAIVRIAEEVAVRCLGLSCPPQIRESILHFASRNAMDIEGLGEKFVEQLLALGLVQ
SVADLYTLTVQDFMRFERMGTKLATKLVDAIERSKHQELGRFIYALGIRHVGERTAKTLA
QSFGSLEHLEEATLEELTSIRDIGLTVAQSIRTFFDNRNNLDIIRRMLQAGVTPAMERKR
VGGRFTGKSFVFTGALTRFTRDEARQMVENQGGHAVGSVSKKTDYVVAGADAGSKLTKAR
ELNVTVLSEDEFLALLETQGETEG
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgccgttacttgataccgcggacccccgcgaaaatgcccggaagaggatcgag
gagttgcgccgcctgctggagcaccacaaccggctgtattacgtgctcgatgcccctgtc
atcaccgatgccgaatacgacgaactcttccgcgaactgcagcacctggaaaagcagttt
cccgacctgatcaccccggattccccaacccagagagtcggcggagcgcccctggccaaa
ttctcggccatggtccaccgcctgcccatgctctctttggaaaacgccatcaccgaagcg
gacatcaccgacttcgacctgcgcatcaaacggatgctcggcatccctcccggacatcct
atcggctacttctgcgaacccaaaatggatggggtggcggtcgaactggtctacaccgac
ggcctgctgacggcagcctccacccgcggagacggtttcaccggcgaagaggtgaccgag
aatgtccgcacgatccgcagcctgcccctgcgcctgaccggtgacaacattccgcgcctg
ctggaggtacggggcgaggtgttcctgtcgctggaagccttccagcgcatcaaccgcgag
aaagaggaaaacggcgagcccccctttgccaatccccgtaacgccgccgccggatcgctg
cgacagctggacccgcgcatcacggcccggcgcccgctttccatcttctgctatggtccc
ggcgtgatcgaagggaccggattcgattcccagcaggccttcttcagtgccatctccggc
tggggcttgccggtgaatcccctggtgcgcggcgaaaccggcattgagggggcagtggat
ttctaccgcgagatcctggcccagcgcgaatcgctcccctacgaaatcgacggcgccgtg
ctcaaggtggacagcttcgaattgcagcgcgagttgggggtcaagagccgctcaccacgc
tgggccctggcctgcaagtttccgccgcgccaggccgtcaccctgctggaggacatccag
ttgtcggtgggaaggaccggcgtgatcaccccggtggcgcagctcaggccggtggaggtt
tccggcgtgacggtctcccgcgccacgctgcacaactgggacgagatcgccctgaaggac
atccgtatcggagaccatgtcctggtcgagcgggccggcgacgtgattccagccgtggtc
aaggtgctcactgagaaacggaccggccaggagcggcagttggatccgcccgagagctgc
ccggaatgcgggtccgccatcgtgagaattgcggaggaggtggcggtacgctgcctggga
ctctcctgccccccccagatccgcgagtcgatcctgcatttcgcttcccgcaatgccatg
gatatcgaaggtctgggggaaaagttcgtcgaacagctgctggccctgggactcgtgcag
agcgtggccgacctgtacacgctcacggtgcaggatttcatgcgcttcgagcgcatgggg
accaaactggccaccaagctggtggatgcgatcgagcggagcaaacaccaggagctgggg
cgcttcatctatgcactcggcatccgccacgtgggagaacggacagccaaaaccctggcg
cagtccttcggcagcctggaacacctcgaagaggccaccctggaggagctcaccagcatc
cgcgacatcggcctgaccgtggcccagagcatccggacctttttcgacaaccggaacaac
ctcgacatcattcgccgcatgctgcaggccggcgtgactcccgccatggaacgcaagcgg
gtcggggggcgctttaccggcaagagcttcgtctttaccggggcgctgacacggtttacc
cgtgacgaggcccgccagatggtggagaatcaaggggggcacgccgtgggttcggtatcg
aagaaaaccgattacgtggttgccggcgcggatgccggcagcaagctgaccaaggcccgc
gagttgaatgtcacggtcctgagcgaggatgagttcctggcgctcctggaaacgcagggg
gaaaccgaagggtga
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integrated database retrieval system
