Geosporobacter ferrireducens: Gferi_09540
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Entry
Gferi_09540 CDS
T04493
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gfe
Geosporobacter ferrireducens
Pathway
gfe03030
DNA replication
gfe03410
Base excision repair
gfe03420
Nucleotide excision repair
gfe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Gferi_09540
03410 Base excision repair
Gferi_09540
03420 Nucleotide excision repair
Gferi_09540
03430 Mismatch repair
Gferi_09540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfe03032
]
Gferi_09540
03400 DNA repair and recombination proteins [BR:
gfe03400
]
Gferi_09540
Enzymes [BR:
gfe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Gferi_09540
DNA replication proteins [BR:
gfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Gferi_09540
DNA repair and recombination proteins [BR:
gfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Gferi_09540
NER (nucleotide excision repair)
GGR (global genome repair) factors
Gferi_09540
MMR (mismatch excision repair)
DNA ligase
Gferi_09540
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Gferi_09540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
HHH
PTSIIA_gutA
zf-tcix
DUF3879
Motif
Other DBs
NCBI-ProteinID:
AOT69799
UniProt:
A0A1D8GFV8
LinkDB
All DBs
Position
complement(1966723..1968714)
Genome browser
AA seq
663 aa
AA seq
DB search
MEFKEAKEKAADLKEQLEYHNYRYYVLDAPEISDYAYDQMMQQLIALEEQFPGLATPDSP
TQRVGGEALSEFQQVVHSVPMLSLDNSYSHEELKEFDKRIRKTIQEEIEYVVEYKIDGLS
IALRYEDGRFVQGATRGDGYIGEDVTQNLRTIKSIPLKLKEEIDLEVRGEVYIARDKFAA
LNRKQEEKGDTVFANPRNAAAGSLRQLDSKITAQRPLDIFIFNIQQVDDHIFEKHTEGLD
YLKDLGFKTSPYEVCNQIEEVIDLCEKWAVKRMDLPFDIDGLVIKINSLRQRDALGIKSK
SPKWAIAYKFPAEQQKTTVQDIIVQVGRTGALTPTAILEPVRVAGSVISRATLHNEDNIR
EKDIRIGDKVIIQKAGDVIPEVVRVIFEERTGEERIFEIPKVCPECGAETIRLAGEAVTR
CMNSACPAQLRRGIIHFVSRDAMNIDGLGESIVTLLLDQHLIQDAADLYYLKKEALVPLE
RMGEKSAQNLIDAIEKSKGNDLDRVIFGLGIKLVGARAASLLAEAFGSMDDFIHAGYEQI
ISIPEIGDKMAESIRNYFLEERNLMVIEKLRRAGVNMEVQKKALKAEEQKLEGLTFVITG
TLSKYRRNEAKEMIERLGGKVSGSVSKKTDYVLAGEEAGSKLEKALELGVSVLDEAAFET
MIQ
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggagttcaaagaagccaaggagaaagctgctgatttgaaggagcagcttgaatatcac
aattatcggtactatgtgctggatgcacctgagatcagtgattatgcatacgatcaaatg
atgcagcagcttatcgccctggaagaacaatttcctgggttagctacccctgattctcct
acccaaagagtggggggggaggccctcagtgaattccaacaggtagtccatagtgtcccc
atgttaagcttagataacagctatagtcatgaagagttgaaagagttcgacaagcgcatc
cgcaaaaccattcaagaggaaatcgaatatgttgtcgaatacaagattgacggtttgtcg
attgcgctgcgttatgaggatggaagatttgtacagggtgctacccggggagacggctac
attggtgaggatgtgacacagaatcttcgtaccattaaaagtatccctttgaaattaaaa
gaagaaattgatctggaagttcggggagaggtatatatcgcccgggacaaatttgcagct
ttaaatagaaaacaagaagaaaaaggtgacacggtttttgcaaatccacgaaatgcagca
gcgggctccctgcggcaactggattccaaaataaccgcccaaaggcctttagacatattt
atcttcaatatccagcaagtggatgaccatatatttgaaaagcatacggaaggattggac
tatttaaaagatttgggttttaagacctcgccttatgaagtgtgcaatcagattgaagaa
gtaatcgatctctgtgagaaatgggctgttaaaagaatggatttgccttttgatattgat
ggcttggtcatcaaaataaacagcctgcgtcaaagggatgccttaggcataaaatcaaag
agtccgaagtgggctattgcgtataaatttcctgctgagcagcaaaaaaccactgtacag
gatatcatcgttcaagtgggaagaacaggcgcattgacacctacggcgatactggagcct
gtgcgggttgcggggtcggtgatcagccgtgccacgctgcataatgaagataatatccga
gaaaaggatattcggataggggacaaggtcatcatacagaaggctggagacgtgatcccg
gaagttgtacgtgtaatttttgaagaacgcaccggtgaggagagaatctttgaaatccct
aaagtttgtcccgagtgtggagcggaaacgataaggttggcaggggaggctgttacccga
tgtatgaacagtgcctgtccggcccaattgcggcgaggcattattcactttgtttcccgg
gatgcaatgaacattgatggattaggagaatctattgtcacgttgctgctggatcagcac
ctgatccaagatgctgctgatctatactatttaaagaaggaagcattagtacccctagag
agaatgggggaaaagtcagcacaaaatttgatcgatgcgattgaaaagtcaaaggggaat
gatttggaccgggttatattcgggttaggtatcaagctggtgggggcccgtgcagcaagc
ttattggcggaagcctttggcagtatggatgatttcatccatgccggttacgaacaaatt
atctcaattcctgagatcggagacaaaatggcggaaagcattcgaaattactttctggaa
gagcggaatctaatggtgattgaaaagctccggagagctggcgtcaacatggaagtacag
aaaaaggcactgaaggcggaagaacaaaaattagaaggacttacctttgtcattacaggt
accttatcgaaatatagacgtaatgaagccaaagaaatgatagaacggttggggggaaaa
gtttccggcagcgtcagtaaaaagacggactatgtactggcaggagaggaagcgggatct
aagttggaaaaggcgttggaattaggtgtttctgttctggatgaagcagcctttgagacc
atgatccaataa
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