Christiangramia flava: GRFL_0430
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Entry
GRFL_0430 CDS
T04640
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gfl
Christiangramia flava
Pathway
gfl03030
DNA replication
gfl03410
Base excision repair
gfl03420
Nucleotide excision repair
gfl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GRFL_0430
03410 Base excision repair
GRFL_0430
03420 Nucleotide excision repair
GRFL_0430
03430 Mismatch repair
GRFL_0430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfl03032
]
GRFL_0430
03400 DNA repair and recombination proteins [BR:
gfl03400
]
GRFL_0430
Enzymes [BR:
gfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GRFL_0430
DNA replication proteins [BR:
gfl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GRFL_0430
DNA repair and recombination proteins [BR:
gfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GRFL_0430
NER (nucleotide excision repair)
GGR (global genome repair) factors
GRFL_0430
MMR (mismatch excision repair)
DNA ligase
GRFL_0430
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GRFL_0430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
Zn_Ribbon_TF
PADR1_N
HHH
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
APU67154
UniProt:
A0A1L7I1S6
LinkDB
All DBs
Position
complement(543521..545515)
Genome browser
AA seq
664 aa
AA seq
DB search
MSIEEKIQSLREELQRHNYNYYVLDKPEISDYDFDMKLKELQELEEQNPEFQDENSPTVR
VGGAVTKNFETVTHEYRMYSLSNSYSKEELEDWEKRIQKVVEGKVEYVCELKYDGASISL
TYENGILQKAVTRGDGFQGDDVTNNIRTIRSVPLKLKGDFPEKFHIRGEIVLPYEGFAKM
NADRVEAGEEPYANPRNTASGSLKLQDSAEVARRPLECLLYSLAGENLGIKTQFEGLEKA
RKWGFKVPGESELKASIEEVLHYINYWDQHRHDLPYETDGVVIKVNDLAQQEELGHTAKS
PRWAMAYKFKAEQESTILEKITYQVGRTGAITPVANLQPVLLAGTTVKRASLHNADQIEK
LDVREGDTVFVEKGGEIIPKIVGVDFQKRAQHSEPTKYATHCPECGTELVRNDGEAQHYC
PNATSCPPQITGRIQHFISRKAMDIEGLGGETVVLLVNAGLIDNYADLYELKKEEVLPLE
RMAEKSAENLISGIQKSKEIPFERVLFALGIRYVGETVAKKLAKHFKSIDALMAASEEEL
TNLDEIGERIAWSVREFFDVESNRHIVDRLKSYGVQMEISAEKLANQTDKLSGNTFVISG
VFEKVSRNELKKMIEDNGGKVSSSISSKTNYLVAGDNMGPSKLAKAENLGTHIISEDDFL
KMLE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagtattgaagaaaagatccaaagccttcgggaggaactgcagcggcataattataat
tactacgtgttggataagcctgaaatcagcgattatgatttcgatatgaagctgaaagaa
ttgcaggaactcgaggagcaaaatcctgaatttcaggatgagaattccccgacagttcgt
gtaggtggtgcggtgaccaaaaacttcgagacggtcactcatgaatatcgaatgtattcg
ctttccaacagctactccaaggaggagctggaagattgggaaaagcgtattcagaaggtt
gtggaagggaaagtggagtatgtttgcgaactgaaatatgacggggcttcgataagcctg
acctatgaaaacggcattctgcagaaagcagtaacccgcggggatggtttccagggggac
gatgtgaccaataatatcaggactatacgctcagtgccactaaagctaaagggcgatttt
cctgaaaagttccatattcgaggagagattgtcctgccttatgaaggttttgcgaaaatg
aatgcagaccgggtggaagccggtgaagaaccatatgcgaacccaagaaataccgcttcc
ggaagtttaaaattgcaggatagcgctgaagtggccaggcgaccgctggaatgcttgtta
tatagccttgctggagaaaacctgggcattaagacccagtttgaaggccttgagaaagct
cgaaaatggggttttaaagtacccggcgagtctgaactgaaggcttccatagaagaagtg
ttgcactacatcaattactgggaccagcatcgccatgatttaccttatgaaactgatggg
gtggtgatcaaagtgaacgatctggcgcagcaggaagaactgggccacaccgcaaaatca
ccaagatgggcaatggcctataaattcaaggcagaacaggaaagcaccattctggaaaaa
ataacctatcaggtaggcagaacgggggctattactccggtagccaacctgcaaccggtc
ctcttggcaggaacgacagtaaaacgagcctcgttgcataatgctgaccagatcgagaag
ctggatgtgcgggagggcgataccgtttttgtggaaaaaggaggggagatcattccaaag
atcgtaggggtagattttcagaagcgcgctcaacactcagaacctaccaaatatgctact
cattgcccggagtgcgggaccgagctggtaagaaatgatggggaagcccagcattactgc
cccaatgccacgtcctgcccgcctcagatcaccggtagaatccagcattttatttcgcgg
aaggccatggatattgaaggactaggtggtgaaacggtcgtgttgctggtcaatgcggga
ttaatcgataattacgctgatctctatgaactgaaaaaagaagaagtacttccgttggag
cgaatggcagaaaaatcggctgagaatctgatctccggaattcagaaatccaaagagatt
ccgtttgagcgggtattgtttgcgctgggtatcaggtatgttggggaaactgttgccaag
aaactggcaaaacacttcaaaagtattgatgcgctcatggctgcttcggaagaagagctc
actaatcttgatgaaatcggggaacgaattgcctggagtgttcgggaattttttgatgtg
gaaagcaacaggcatatcgtggaccgactcaaaagttacggggtgcaaatggaaatttcc
gcagaaaaactggctaatcaaaccgataagctgagcgggaatactttcgtgatttcagga
gtttttgaaaaagtttccagaaatgagctcaaaaaaatgatcgaggataatggcgggaaa
gtttccagttccatttcttcgaagacgaattacctggttgcgggcgacaatatggggcca
agcaagcttgccaaagctgaaaatttaggtacccacatcatcagtgaagatgatttcctg
aaaatgctggaatag
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integrated database retrieval system
