Geospiza fortis (medium ground-finch): 102031898
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Entry
102031898 CDS
T03755
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C-like
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04010
MAPK signaling pathway
gfr04020
Calcium signaling pathway
gfr04260
Cardiac muscle contraction
gfr04261
Adrenergic signaling in cardiomyocytes
gfr04270
Vascular smooth muscle contraction
gfr04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102031898
04020 Calcium signaling pathway
102031898
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
102031898
09153 Circulatory system
04260 Cardiac muscle contraction
102031898
04261 Adrenergic signaling in cardiomyocytes
102031898
04270 Vascular smooth muscle contraction
102031898
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102031898
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
102031898
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
CAC1F_C
PKD_channel
Motif
Other DBs
NCBI-GeneID:
102031898
NCBI-ProteinID:
XP_005425343
LinkDB
All DBs
Position
Un
AA seq
2104 aa
AA seq
DB search
MNANAAAGLAPEHIPTPGAALSWQAAIDAARQAKLMGSAGNATISTASSTQRKRQQYGKQ
KKQGTTTATRPPRALLCLTLKNPIRRACISIVEWKSFEIIILLTIFANCVALAIYIPFPE
DDSNATNSNLERVEYLFLIIFTVEAFLKVIAYGLLFHPNAYLRNGWNLLDFIIVVVGLFS
AILEQATKADGGNSIGGKGAGFDVKALRAFRVLRPLRLVSGVPSLQVVLNSIIKAMVPLL
HIALLVLFVIIIYAIIGLELFMGKMHKTCYHVQGGLIDTPAEDDPSPCAPQSAHGRQCQN
GTECKAGWEGPKHGITNFDNFAFAMLTVFQCITMEGWTDVLYWMQDAMGYELPWVYFVSL
VIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDID
PENEDEGMDEEKPRNMSMPTSETESVNTDNVPGADMEGENCGARLAHRISKSKFSRYWRR
WNRFCRRKCRAAVKSNVFYWLVIFLVFLNTLTIASEHYNQPDWLTEVQDTANKVLLALFT
AEMLLKMYSLGLQAYFVSLFNRFDCFIVCGGILETILVETKIMSPLGISVLRCVRLLRIF
KITRYWNSLSNLVASLLNSVRSIASLLLLLFLFIIIFSLLGMQLFGGKFNFDEMQTRRST
FDNFPQSLLTVFQILTGEDWNSVMYDGIMAYGGPSFPGMLVCIYFIILFICGNSILLNPA
XXXXVDNLADAESLTSAQKEEEEEKERKKLARTASPEKKQEMEKTAVEEETKEEKIELKS
ITADGESPPATKINVDDYQPNENEEKSPYPTTEAPAEEDEEEPEMPVGPRPRPMSELHLK
EKAVPMPDASAFFIFSPSNRFRVHCHRIVNDNIFTNLILFFILLSSISLAAEDPVRHLSF
RNQILFYFDIVFTVIFTIEIALKMTAYGAFLHKGSFCRNYFNILDLLVVSVSLISFGIQS
SAINVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVIVTTLLQFMFACIGV
QLFKGKLYSCTDSSKQTEAECRGYYITYKDGEVSQPMIQPRSWENSKFDFDNVLTAMMAL
FTVSTFEGWPELLYRSIDSHMEDVGPIYNHRVEISIFFIIYIIIIAFFMMNIFVGFVIVT
FQEQGEQEYKNCELDKNQRQCVEYALKARPLRRYIPKNQYQYKVWYVVNSTYFEYLMFXX
XXNTICLAMQHYGQSCMFKEAMNILNMLFTGLFTVEMVLKLIAFKPKGYFSDPWNVFDFL
IVIGSIIDVILSETNPAEHTQCSSSMNAEENSRISITFFRLFRVMRLVKLLSRGEGIRTL
LWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALNDTTEINRNNNFQTFPQAVLLL
FRCATGEAWQEIMLACLPDKKCDPESEPANSTEADHSCGSSFAVFYFISFYMLCAFLIIN
LFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLG
FGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANEELRAII
KKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKPSQRNAL
SLQAGLRTLHDIGPEIRRAISGDLTAEEELDKAMKEAVSAASEDDIFRRAGGLFGNHVSY
YQSDGRSGFPQTFTTQRPLHINKSGNNHGDTESPSHEKLVDSTFTPSSYSSSGSNANINN
ANNTALCRFPSPPSYPSTVSTVEGHGTPLSPTICVQEAPWKLPSKRXVSRDSQLAIVCQE
EVSQDETYDENLNEDIEYCSEPSLLSTEMLAYQDDENRQLTPPEHSKGEDTRHSPKKGFL
CSSALGRRASFHLECLKRQKNQGVDVSQKTVLPLHLVHHQALAVAGLSPLLQRSHSPTAF
SRLCATPPATPCNRGWPQQSIPTLRLDGADSSEKLNSSLPSVHCGSRYPESGGSPRRARP
VSLTVPSPSAGSSRQFHGSASSLVEAVLISEGLMQFAQDPKFIEVTTQELADACDMTIEE
MENAADNILNGNSKQSPNGNLLPFANCRDPGQDSAGEEEEEVQNPDCRISQEELKDSRIY
ISSL
NT seq
6315 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccaatgcagctgcagggcttgccccggagcacatccccacgccaggggcagct
ctgtcctggcaggctgccatcgatgctgccaggcaagccaagctgatgggcagcgctggc
aacgccaccatctccacggccagctccacgcagaggaaacggcagcagtatggcaagcag
aagaagcagggcaccaccacagccacccgtcctccccgggcactgctgtgcctcacgctg
aagaatcccatccggagggcgtgcatcagcatcgtcgaatggaaatcatttgaaataatt
attttactgactatttttgccaattgtgtggccttagctatctatatcccctttccagaa
gatgattccaatgccaccaattccaatctggaacgagtggaatatctctttctcataatt
tttacagtggaagcatttttaaaagtaatagcatacggacttctctttcaccccaacgct
tacctccgcaatggctggaatttactagattttataattgtggtagtagggctttttagt
gcaattttagaacaagcaaccaaagcagatggagggaattcaataggaggaaaaggtgcc
ggattcgatgttaaagcactgcgggctttccgagtattacgtccactacggctggtgtct
ggagttcctagtctccaggtggttttaaattcaattatcaaggccatggtccctttgttg
catattgccctgctggtgctgtttgtcattattatctatgccatcattggactggagtta
ttcatggggaagatgcacaagacctgctaccatgtgcaagggggactgatagatacacct
gcagaagacgatccgtccccgtgtgccccccagtctgcccacgggcggcagtgtcagaac
ggcaccgagtgcaaggcgggctgggagggacccaagcatggcattaccaactttgacaat
tttgcttttgccatgctcacggtgtttcagtgcatcaccatggagggctggacagatgtg
ctctactggatgcaggacgctatgggctatgagttaccatgggtgtattttgtcagtctg
gtcatctttggatcctttttcgttctaaatctggttcttggtgtgttgagcggggagttt
tccaaagaaagagaaaaggccaaggctcgaggcgatttccagaagctacgggaaaagcag
cagctagaggaggatctgaagggatacttggactggataactcaagcagaagatattgat
ccagaaaatgaagatgaaggcatggatgaggagaagcctcgaaacatgagcatgcccacc
agcgagaccgagtccgtgaacaccgacaacgtccccggagcggacatggaaggcgagaac
tgcggcgcgaggctggcgcatcggatctcaaagtcaaaatttagtcgctactggcgccga
tggaatcgattctgcagaaggaagtgccgtgctgctgtcaagtccaatgttttctattgg
ctggtgatcttcctcgtgtttctcaacaccctcaccattgcctctgagcactacaaccag
ccagactggctcacggaggtccaagacactgccaataaggtgctgctagctcttttcacg
gcagagatgctgctgaagatgtacagccttgggctccaggcctactttgtgtccctcttc
aaccgcttcgactgtttcatcgtgtgtggaggcatcctggaaaccatcctggtggagaca
aagatcatgtcacccctgggcatttcggtcttgagatgtgtgagactcctcagaatattt
aaaatcacaagatattggaactccctgagtaatcttgtggcttcactcctgaattcagtc
cgctccattgcctccctgttgctgcttctcttcctcttcatcatcatcttctccctcctg
gggatgcagctctttgggggcaagtttaactttgatgagatgcagaccaggaggagtaca
tttgacaacttccctcagtccctcctgactgtgtttcagatcctgactggggaggactgg
aattcggtgatgtatgatgggatcatggcttatggcggcccctcttttccaggaatgttg
gtctgtatttacttcatcatcctcttcatctgtggaaactccattctgttaaatcctgct
gannnnnnnnnngtggacaaccttgctgatgctgagagtttaacatctgcacagaaagag
gaggaagaggaaaaagaaaggaaaaagctagctaggactgctagtcccgaaaagaaacag
gagatggagaaaacagctgtggaggaagagacaaaggaggagaaaattgagctgaaatcg
atcactgctgatggagagtctccaccagctaccaagatcaacgtggatgattaccagccc
aatgaaaatgaagaaaagagcccttatcccacaacagaagcaccagcagaggaagatgag
gaagaacctgagatgcctgtcggccctcgacctcgcccgatgtctgagctgcacctcaag
gaaaaggctgtgcccatgcctgatgccagtgcttttttcatcttcagtcctagcaacagg
tttcgcgtgcactgccatcgcatcgttaacgataacattttcaccaacctgatcctgttt
ttcatcctgctcagcagcatctccctggcagctgaggaccccgtgagacacctctccttt
aggaaccaaattctcttttattttgatatagtttttactgtcattttcaccattgaaatt
gctctgaagatgactgcctacggggctttcctccacaagggctccttctgcaggaactat
ttcaacatcttggacctgctggtggtcagcgtttctctcatctcctttgggatccagtcc
agtgccattaatgtggtgaagatcctgcgtgttctgcgggtcctcaggccactgagggcc
atcaacagagccaaaggactaaagcacgtggtccagtgcgtgtttgtcgctatccgaacc
atcgggaacattgtgattgtcaccactttgctgcagttcatgtttgcctgcattggagtt
cagctgtttaagggcaagctgtacagctgcactgacagctccaagcagacagaagcagaa
tgcagagggtactacatcacctacaaggatggggaggtcagccagcccatgatacagccc
cgcagctgggagaacagcaagtttgacttcgacaacgtcctgactgccatgatggccctc
ttcaccgtctccaccttcgagggctggccagagttgctgtataggtccattgattcccac
atggaggatgtgggacccatctataatcacagggttgagatctccatcttctttattatc
tacatcatcatcattgctttcttcatgatgaacatcttcgttggtttcgtcatcgtcaca
tttcaggaacaaggagaacaagagtacaagaactgtgagctggacaaaaaccagcgccag
tgtgtagagtatgccctgaaagcccggcctctgcggagatacatccctaaaaaccagtac
cagtacaaagtttggtatgtggtcaactccacctattttgaatacctgatgttcngnnnn
nnnnnnaacaccatctgcctggccatgcaacactatggtcagagctgcatgttcaaggaa
gccatgaacatcctcaacatgctcttcactgggctcttcactgtggagatggtcctgaag
ttaattgccttcaaacccaagggttactttagtgatccttggaatgtttttgacttcctc
atcgtaattggcagcattatagacgtcattctcagtgaaactaatccagctgaacatacc
caatgctcttcctctatgaacgcagaggaaaactctcgcatctcaatcaccttcttccga
ctcttccgcgtgatgcgcctcgtgaagctcctgagccgaggggagggcatccggacactg
ctgtggaccttcatcaagtccttccaggctctcccctacgtggctcttttaatagtgatg
ttgttcttcatctacgctgtgattgggatgcaggtgtttggtaaaattgcgctgaacgac
accacagaaatcaaccgcaacaataacttccagaccttcccccaggcagtgctgctgctt
ttcaggtgtgccacaggtgaggcctggcaggaaatcatgctggcatgtctccctgacaag
aagtgtgacccggagtcggagccggccaactccacagaggccgatcactcgtgtggcagc
agcttcgccgtcttctacttcatcagcttctacatgctctgtgccttcctgatcatcaat
ctttttgtcgctgttataatggataacttcgattacctgacacgggactggtccatttta
ggaccacaccacctggatgagtttaaaaggatctgggcagagtatgaccctgaagctaag
ggacggatcaagcacctggacgtggtgacgctgctgcggcggatccagcccccgctgggc
tttgggaagctctgccctcaccgggtggcttgcaaacgccttgtctccatgaatatgcca
ctgaacagcgatgggactgtcatgttcaatgccactctctttgcactggtcagaacagca
ctgaggatcaagacagaaggtaacctggagcaagccaacgaagagctgagagcaataatt
aagaaaatctggaagcgcaccagtatgaagctgctggaccaggtggtgcctcctgcaggt
gatgacgaggtgaccgtggggaagttctacgccactttcctgatccaggagtatttcagg
aagttcaagaagcgcaaagagcaggggctggtggggaagccctcccagcgcaacgcgctc
tccttacaggctgggctgcgcacgctgcacgacattgggcccgagatccgacgggccatt
tctggagacctgaccgcggaagaggagctggacaaggccatgaaggaagctgtttctgct
gcctcggaagatgatatcttccggagagctggaggcttgtttggaaaccatgtgagctac
taccaaagtgatggcaggagtgggttcccccagacattcaccacccagagacctttgcac
atcaacaagtctggcaacaaccacggcgacaccgagtctccatctcacgagaagctggtg
gactccaccttcactcccagcagctactcatcttcaggctccaatgccaacatcaacaat
gccaacaacaccgccctgtgtcgcttccccagcccacccagctaccccagcactgtcagc
acggtggaaggccacgggacccccctgtcacccaccatctgcgtgcaggaggctccctgg
aagctcccctccaaaaggtgagtttccagagacagccagctggcaattgtttgccaagag
gaagtgtctcaggatgagacttatgatgaaaatttgaatgaagacattgagtactgtagt
gaaccaagtctgctctctaccgaaatgcttgcataccaagatgatgaaaacagacaactc
actccaccagagcacagcaaaggagaggacacccggcactctcccaagaaggggttcctg
tgctcctcagctctaggtcgaagagcatcttttcacttagagtgtttgaaaagacagaaa
aaccagggtgtggatgtctcacagaagacagtcctgcctttgcatctggtccatcatcag
gccctggcagtggctggcctgagtcccctgctgcagcgaagccattcccccaccgcgttc
tctcggctgtgtgctacgcccccggccacgccctgcaaccggggctggccgcaacagagc
atccccacgctgcgcctcgacggggcggactcctcggagaagctcaacagcagcttgccg
tccgtgcactgcggctcccggtaccccgagagcggcggcagccccaggagagcccggccc
gtgtccctgaccgtgcccagccccagcgcagggagcagccggcagttccacggcagcgcc
agcagcctggtggaagcggtcttgatttcggaaggactgatgcagtttgctcaagatcca
aagttcattgaggtcacaacccaggagctcgcagacgcctgcgacatgacgatagaagag
atggaaaatgcagcagacaacattctcaatggtaacagcaagcagagccccaatggcaac
ctcttgccttttgctaactgcagggacccagggcaggacagtgcaggagaggaagaggaa
gaggtgcagaacccggattgtaggataagtcaggaggagctcaaggacagcaggatttat
atcagcagcctgtag
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integrated database retrieval system
