Geospiza fortis (medium ground-finch): 102039129
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Entry
102039129 CDS
T03755
Symbol
APAF1
Name
(RefSeq) apoptotic peptidase activating factor 1
KO
K02084
apoptotic protease-activating factor
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr04115
p53 signaling pathway
gfr04210
Apoptosis
gfr05164
Influenza A
gfr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
102039129 (APAF1)
04115 p53 signaling pathway
102039129 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
102039129 (APAF1)
05168 Herpes simplex virus 1 infection
102039129 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
NB-ARC
APAF1_C
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
APAF-1-like_WHD
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
NBCH_WD40
CARD
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
WD40_RFWD3
eIF2A
CARD_2
WD40_like
PEP5_VPS11_N
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_Nup120_160
Beta-prop_WDR11_2nd
Beta-prop_DCAF12
WDR54
AAA_16
DUF2415
RAB3GAP2_N
AAA_22
Dark_WHD
Motif
Other DBs
NCBI-GeneID:
102039129
NCBI-ProteinID:
XP_005421670
UniProt:
A0A6I9HJ13
LinkDB
All DBs
Position
Un
AA seq
1249 aa
AA seq
DB search
MDVKSRNYLLMNREALENDIKTSYIMDRMISDEVLTLQEEERVRQQNTRKERAAMLINII
LSKDNNSYRSFYNALLHEGYRDLAALLQDGIPSVSSGNRKSSMDGMNSYVKTILCEGGVP
QRPVVFVARPKLVDAIKKKLYCLGSNPGWVTVYGMAGCGKTVLTAEALRDPQLLEDYFPG
GVHWISVGKQDKAGLLIKLQNLCSRLEHDSTLSQRPPLNIEEAKDRLRLLMLRKYPRSLL
VLDDIWDSWVLKAFDNQCQVLITSRDRSVTDAVAGNKYEVHVGSGLAHEKGLEILSLFVN
MKISELPEQANSLVRECKGSPLVISLIGALLRDFPSRWEYYLRQLQNKQFRRIRKSSFYD
YEALDEAMSISVEQLDDNYKDYYKDLSVLPKDVKVPTKVLCILWDMETEEVEDILQEFVN
KSLLFCDRNGKSFHYYLHDLQLDFLTEKNRNQLQELHKNIVNQYKKYYKLNTPVLSQEDC
MYWYNFLAYHMAGAKMQQELRDLMFSLDWIKAKTELVGPAHLIHEYVEYSSALDQKDSTV
RENFQEFLSLNGHLLGRQPFPDIIQLGLCQPETSEVYQQAKLHAQRETGTFYLEWVNKKS
LKNLYRLVVRPHRDAVYHACFSKDRQRIASCGADKTLQVFKAESGERLLEINAHDDEILC
CAFSADGEFVATCSSDKKVKVWNSRTGQCRCVYEEHSEQVNCCQFNNKSGQYLLATCSND
TFIKIWDLNGKYCRNTMIGHENSVNHCRFSPNDEYVASCSTDGTVKLWEARSGNELKSIE
IKDFFKNADEQPDDVEVLVKCCSWSRNGNMILVAAKNKLLLFDINTCGLLTQVIVSHHST
IQYCDFCPGDELVAVALSHCSVELWNIKSLSKVAYCRGHMSWVHCVTFSPDGSLFLTSSD
DQTIRIWETKKVCQSSDAVLKSELDVVFHNGEVMILAIYNQKNLQLINGNTDNVIMQTAA
QESPISCCCLSEDLKFAAFGQESGTIKVLQLSDGKVLKSWEAYRTSVQHCQFTTDCQTLI
SSAHDSVIQIWNWQLSECVFLRGHKEAIKDFRLLENSKLLSWSFDGTVKVWNITTGNPEK
DFACHGGAVLSCAVSPDGSKFSSASADKTAKIWSFESSSVLHELKDHEACVRCCTFSPNN
KLLATGDDKGEIRIWDVLTGALLHFCSPVTVDEGEPTHGGWVTDLSFSPDSKMLVSSGGY
LKWWNVTTGESLQTFYTNGTNLKSIYVSPNFKVYVTVDNLGILYVLQKF
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaagagtagaaactatttgcttatgaatcgtgaagcactggaaaatgacatc
aagacttcttatattatggatcgtatgatttctgacgaagtactgacattacaggaggag
gagagagtgaggcaacagaatacccggaaggagcgagcagctatgctaataaacattatt
ctttcaaaagataataattcatatagatccttttataatgcactgctccatgaagggtac
agagatcttgctgcacttcttcaggatggcatcccttctgtctcgtctggtaacagaaag
agttcaatggatggaatgaattcctatgtgaagaccattctctgcgaagggggtgtgcca
cagagaccagttgtgtttgtcgctcgaccaaaactggtagatgctattaaaaagaaactg
tactgcttgggaagtaacccgggttgggtcacagtttatggaatggcaggctgtgggaag
actgttttaacagcagaagctttaagggatcctcagctcttggaagattattttccagga
ggagttcactggatctctgttgggaagcaggacaaagcagggctgctcataaaacttcag
aatctctgcagtagattggaacatgactccactctttcacaaaggccaccattgaacatt
gaggaggctaaagatcgtcttcgtttgctgatgttgcgcaaataccccaggtctcttttg
gtcctggatgacatttgggattcgtgggtgttaaaagcatttgataatcaatgtcaggta
ctgatcacaagcagggacaggagtgtaacagatgctgtggccggcaataaatacgaggtt
catgtgggaagtggactagcacatgagaaaggactggagattttatccctgtttgtgaat
atgaaaatatcagaacttccagaacaagctaactctcttgtaagagaatgcaaaggttct
cctctcgtgatatccttgataggtgctttactccgagacttcccgagccgctgggaatac
tatctcaggcagctgcagaataaacagtttagaagaataagaaaatcttccttctatgat
tacgaagcccttgatgaagcaatgtccataagtgttgagcagctggatgacaattacaaa
gattactataaagacctctctgtcctcccaaaagatgttaaagtacctactaaggttctc
tgtattctttgggatatggaaactgaagaagttgaagatatactacaggaatttgttaac
aaatcactgttgttctgtgatcgtaatgggaagtcattccattattatttacatgatctt
cagcttgactttctcacagagaagaaccgcaaccagcttcaggagttacataaaaacata
gtaaatcagtacaagaaatactacaagcttaatacacctgttctgtctcaagaggattgc
atgtactggtataactttctagcatatcacatggcaggtgccaaaatgcagcaggagctc
cgtgatcttatgttttctttagattggattaaagctaaaacagaattggtggggcctgct
cacctgattcatgaatatgtagaatatagttcagccctggatcaaaaggatagtacagtg
cgtgagaatttccaggagtttctgtccttaaatgggcaccttcttggccggcagccgttt
cctgacatcatccagttgggtctttgccagccagagacatcagaggtgtatcaacaagcc
aagctgcatgctcaaagggaaacaggaacattttatctggagtgggtaaataaaaaatcc
ttgaaaaatctctaccgtctggttgttcgcccgcatagagatgcagtttaccatgcctgc
ttttctaaggacagacaaagaatagcatcatgtggagctgataaaactcttcaggtgttt
aaagcagaaagtggagagagactcctagagataaatgcccacgatgatgaaatactctgt
tgcgctttttctgctgatggtgaatttgtagcaacttgttcaagtgataaaaaagtcaag
gtgtggaattcaagaacaggccagtgtaggtgtgtgtatgaagagcactctgagcaggtc
aattgctgccagttcaataacaaaagtggtcagtaccttctggccacctgctcaaatgac
actttcatcaaaatttgggatttgaatggaaaatactgtagaaataccatgataggtcat
gaaaattctgtcaatcactgcagattttcaccaaatgatgaatatgttgctagctgctcg
acagatggaacagtaaagctttgggaagcacgctcaggaaatgaactgaaaagcattgag
ataaaagatttctttaaaaatgcagatgaacaaccagatgatgtggaggttttagtaaaa
tgttgctcttggtccagaaatggtaacatgattttggtggcagccaaaaataagcttttg
ctttttgacatcaacacctgtggtttgttaactcaagtcattgtcagtcatcacagcaca
atccaatactgtgacttctgtcctggggatgaattagtagcagttgctttgtctcactgc
tcagttgagttatggaatattaagtctttatcaaaagtggcatattgcagaggacacatg
agctgggttcactgtgtgacattttcaccagatggatctttatttctgacttcatctgat
gaccagacaatacgtatctgggaaacaaagaaggtgtgccagtcttctgatgctgtgctg
aagagtgaactggatgttgtgtttcacaatggtgaagtgatgattttagccatctacaat
cagaagaatttacaacttatcaatggaaacacagacaacgttattatgcagacagcagct
caagaatcccccatttcctgctgttgcttaagtgaagatcttaaatttgcagcttttgga
caggagagtggaacaataaaggtactacagttatcagatgggaaggttctgaagtcctgg
gaggcctacaggacatctgtgcagcactgtcaatttacaaccgactgtcagactctcatc
tcaagtgctcatgattcagttatacagatatggaattggcaattgagtgaatgtgtgttc
ctaagagggcacaaggaagcaatcaaggattttagacttctggaaaattcaaaacttctc
tcttggtcattcgatggaaccgttaaggtttggaatatcactactggaaacccagaaaaa
gattttgcttgtcatggaggtgctgttctttcctgtgctgtttcacctgatggtagtaaa
ttttcatctgcttctgctgacaaaactgcaaagatatggagctttgaaagttcatctgtt
cttcatgaactgaaggaccatgaagcctgtgtgcggtgctgcactttctctcctaataac
aaactgctggccactggagatgacaaaggagaaataaggatttgggatgttttaacaggt
gcattacttcatttctgctccccagttactgtagatgaaggagagccaacacatgggggt
tgggtaacagacctctccttttctcctgacagtaaaatgcttgtgtcatctggaggctat
cttaagtggtggaatgtaactactggagaatccttacaaaccttctacacaaatggaaca
aacctcaagtcaatatatgtgtcccctaatttcaaagtatatgtgactgttgataatctt
ggcattctttatgtactacagaagttctga
DBGET
integrated database retrieval system
