Geospiza fortis (medium ground-finch): 102039397
Help
Entry
102039397 CDS
T03755
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain containing 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gfr03036
]
102039397 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
gfr03400
]
102039397 (SMCHD1)
Chromosome and associated proteins [BR:
gfr03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102039397 (SMCHD1)
DNA repair and recombination proteins [BR:
gfr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102039397 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
102039397
NCBI-ProteinID:
XP_005418331
UniProt:
A0A6I9HEK8
LinkDB
All DBs
Position
Un
AA seq
1928 aa
AA seq
DB search
MLLLATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSI
QIKLLFDDSQGKPAVAVIDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVP
RSLNSDISYFGVGGKQAVFFVGQSARMISKPAASQDVHELVLSKEDFEKKEKNKEAIYTG
FIRNRKPSDSTHIKSDDERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQ
LAHIYHYYIHGPKGNEANAVTKEISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYI
NTAADSFEFKAHVEEEGIVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFLVEKGA
RGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNYKFHVSTNK
FTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVR
TDVLSKRMQSPWTMYAAIEWDGKTYKTGQLVKTTKTHPIFYGSIEKFYLYGDHDGDIFAT
GGEVQIALEPQALYAETKIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELL
PNETRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISH
ISQHGGKWPYWFKKMENLQKLGDYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPE
KFLVGLLELPFRIGVPFSIPLELQDEFGHATRLTNRIRPILEASGLTLKHEDIPVATKCV
IKGVTAKGCVNSCQGKTFNLKITLPGLKEDTQIIKIRLQPGPPRQLKVKPDSEILKIENG
TAFPFQVEVLDESGNITAQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIK
KDQILKARFEVLNCKDVPPVEKIIKLLPSSHVARLQVLSMNGQKALQIKHQDEITCVAGQ
VMNKLIFQMYDEAEREIPITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDARYC
LITYLDEHVSLESAFTVRPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQ
TVTSACVNSLGVSGPGLDKSNLKITWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDF
IRVNLVAGSPAKLQLVDWPELEKPVAVINGRELQRPLTVQLCDQWGNPTPEPNVKINLTK
SNNLKLVPSNQQHKTDDTGRANLGVFSIHAPRGEHILQIKASYNKAILDCLVITINVLPD
PEKPICLNVKYDKSPSFPAGGTFPDFMVSVLSEDNTIIKNINPARISMKMWEAQSGRVRT
PVDVTTFSCSKVKDDKEDGFFYFRDKMVPERVGTYMIQFTFAMDKTNMLNSEQIIIEVVP
NDPVRLLPDSLPATPAVSNVRALTSRTLVKDLYLHLMDEYNNHTGLDLVGRIIVKIKSPS
EEDIEIPQFQGKVNTVEFPLESGSAEINLVLAEDSPGRDSTEYILVFEPHLPALKKPLEP
YCLSFMFYNDSKKQQLMATLTREKDQLSKSIDLYRKMFDTTNQLVAEMKCQVKEAETREA
LLKNELKKHQIELPQTNTLQYVDSLLKKKMLEQEGVMKQPRRTCTLPNYPKGNQDILGKI
AHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPD
WSRPLPHSRNGRTFFRPIGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHY
RKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTISAQI
DLLQQYRAAVIKFDNVNKDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTPALS
DKGAESLLQPIMLDISDTPTPPKRMRKDTMKKLYSSEEWISSPAKQQQQQVLQMAPSELN
GTPRKRKA
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttttggcaaccaaggagcgaattgactttctgccccactacgacacacttgtc
aaaagtggcatgtatgagtactatgccagcgagggccaaaatcctttgccatttgccctt
gctgaattgattgacaattctctatcagctacctctcaaaatactggcattcggagtata
cagataaaattgttgtttgatgattcccaaggaaaaccagctgttgctgtgattgataat
ggaagtggaatgacttctaaacagcttaacaactgggctgtatatagattgtcaaagttt
acaagacaaggtgactttgaaagtgatcactcaggatatgtacgccctttgccagtgcct
cgtagtttaaatagtgatatctcatattttggagttggaggcaagcaagcagtgttcttc
gtgggacagtctgccagaatgataagcaaacctgcagcatctcaggatgttcatgaactt
gtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaatatatactgga
ttcattcgaaacagaaagccatctgattctactcacatcaaaagtgatgatgaaagattc
cttcataatctaatattagaagaaagggataaagagagtttcacagcagttgtcattaca
ggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttggacaaggcag
ctggcgcatatctatcactattatatccatggaccaaaaggaaatgaagctaatgctgta
acaaaagaaataagccctttcaacaacatcgatattcagatctcaatgtttgaaaaggga
aaagtaccaaagattgtcaatctgagggagatcaaagatgacatgcagacattgtatata
aacactgcagcagatagttttgagttcaaggcacatgttgaagaagaaggtatagttgaa
ggcatcatccgataccatcccttcctttatgataaggaaacataccctgatgatccatgt
tttccatcaagattaaatgatgatgatgacgatgactgttttttagtagaaaaaggtgcc
agaggaaaaaggcctatttttgaatgtttttggaatggaagattaataccatacacaact
gtggaagattttgactggtgcgctcctccgaagaagagaggattggcaccaattgaatgc
tacaacagaatttctggtgcattgtttaccaattataagttccatgtcagcacaaacaaa
ttcactttcatggatctggagctgaagctaaaggataagaatactctgttcacacgaatc
ttcaatggacaggagcagcgaatgaaaattgacagagaatttgctctgtggctcaaagac
tgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaataactgtacgt
actgatgtattatccaaaagaatgcagagcccttggacaatgtatgctgcaatagagtgg
gatggaaaaacatacaaaactggacagctggtgaaaactactaagactcatccaatattc
tatggaagcattgagaaattttacttgtatggggaccatgatggggatatatttgccact
gggggagaggttcaaattgctttggaaccacaggcattgtatgctgaaacgaaaattatt
ccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatacatagaggat
gaaatggcaagacttcctgataaattgtcagtaacatggcctgaaggagatgagttgtta
ccaaatgaaacaagatttgctggtacaccaataggagcattaagaatagaaattttaaat
aaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttcaaagaaactt
cttgttgaactcaaagttattttgcattcacctactgagaataaagaaataatttcccat
atcagtcagcatggaggcaagtggccatactggtttaaaaaaatggaaaatcttcagaaa
cttggtgactactccttgaaactgcaagtagtgttgaatgaaagtaatgcagatacttat
gcaggaaggcctctgccatctaaagtatttaaatttactattgtagagggcaaaccagag
aaatttttggtgggtctcttggagcttccttttcgaattggagtaccttttagtattcct
ttggaattgcaggatgaatttggtcatgcaacacgcttgacaaatcgcattagaccaatt
ctggaagctagtggattaacactgaagcatgaagacatacctgtggcaacaaagtgtgtc
attaagggagttactgctaaaggctgtgtaaatagttgccagggcaagacctttaatctg
aagattactcttcctggtttgaaagaagatacacaaatcattaaaataagattgcagccc
ggccctcctcgtcaattgaaagtaaaaccagattccgaaattctaaagattgaaaatggt
acagcttttccctttcaggttgaagtactggatgaatcaggaaatataacagcacagcca
gagttgattgttcattgtaagtttttaggtgcttcagaccttcctgtgtattctgtggac
tgcagtaatggaggaacaaacattttaactggtccagttatacatgtacagaatatcaag
aaagaccagatattgaaagcaaggtttgaagtacttaattgcaaagatgtgccaccagtg
gaaaagattataaaacttcttcctagcagtcatgttgcaagactacaggtcttaagtatg
aatggacaaaaagctcttcagattaaacatcaggatgaaatcacttgtgttgctggccaa
gtcatgaataaacttatatttcagatgtatgatgaagcagaaagggaaatacccataact
gcagctgctgcagaaaaaatcaaggtcaactggacacctaaaattgacagagagctgttg
atgcagggattattacctgatgtaaaagtaccaacttcagtaaaagacgcacgttactgt
ctaattacttaccttgatgagcacgtttctttggaaagtgcattcacagtcagaccagtt
cctgatgaacccaaacacattaaatgtaaactaaaaggctcaaacacactgcagatgggt
gaagaactgcagagtgaaattgatgtaatgattacagatcagtttggaaatcaggttcag
acagtgacatctgcatgtgtaaattccctaggagtttctgggcctggacttgataaatca
aatttgaaaataacttggcaggaaagtactcagacaatgaaagtaaaaggtattcgatac
aaaccctgtttacttggaagcaaagaattgtgctttgcttggcgtgagttttctgacttt
atcagagtgaatttggtagcaggatccccagctaaattgcagctagtggattggccagag
ttagaaaagcctgttgcagtgattaatggtagagaattgcagaggcctcttactgttcag
ttgtgtgatcagtggggaaatccaactcctgaacctaatgtcaaaatcaaccttacaaag
agtaacaacttaaagcttgttccttcaaaccagcaacataaaacagatgacactggtagg
gctaacctgggagtttttagtattcacgcacccaggggagagcacattttacagattaaa
gcctcatacaacaaggccatattagattgtcttgtaatcacaataaatgtcctgcctgat
cctgagaaacctatctgcctaaatgttaaatatgacaaaagtccttcttttccagcagga
ggtacttttcctgattttatggttagtgttctttctgaagataacaccatcattaaaaat
attaatccagcacgaatttcaatgaaaatgtgggaagctcagagcggccgggttaggaca
ccagttgatgttacaacgtttagctgtagtaaggtgaaagatgacaaggaagatggcttc
ttctacttcagggataaaatggttccggagagggtgggcacttacatgatccagtttacc
tttgcaatggataagacaaatatgcttaacagtgaacagattataattgaagttgtacct
aatgaccctgtacgcttgttacctgattctttaccagctactccagcagtttccaatgtt
cgagctcttaccagccgtacactggtcaaggatttatacctccatttaatggatgaatac
aacaaccacactggacttgatcttgttggcagaataatagtgaaaattaaaagccccagt
gaagaagatattgagatcccgcagtttcaggggaaagtcaatacagtagagtttccattg
gagagtggatcagctgaaattaatttagtgctggctgaagacagtcctggaagagatagc
actgaatatattcttgtctttgagccacatctgccagctttgaaaaaacctttggaacca
tattgtctctcatttatgttttacaatgattccaagaagcagcagctgatggcaacactg
accagggagaaagaccaattatctaagtccatagatctttacagaaagatgtttgatact
acaaatcagctcgtagctgaaatgaaatgtcaggttaaagaagctgaaacgcgagaagct
ctcctgaagaatgaactgaaaaagcaccaaattgaattaccacagacaaacacacttcag
tatgtggattctcttctgaaaaaaaagatgttggaacaagaaggagtaatgaagcagcca
aggagaacttgtaccctcccaaactatccaaaaggcaaccaggatattctaggcaagatt
gcacatttagctcaaattgaggataatgaagcagcaaaagtcatctcttggcacctggca
agtgacatggactgtgtagtcacactgaccacggaagctgctcgttctatcttcgatgaa
actcaaggtcgacaacaagtgttaccccttgattccatttacaagaagacacttccagat
tggagcagacctttacctcactcgagaaatggaagaaccttcttcagacctattggaaat
cctgtatttgccagagatctgttaacatttccagataacatagagcattgtcaaacagtg
tttggtatgctcttgggtgatactatcattatagataacttggatgctgccaaccactac
agaaaagaggttgtaaaaattacacactgccctaccttgctgactagggaaggagacagg
attcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatggacaaactc
agaggaatggtatttggagcaccaatgccaaaactttattctacgatctctgcacaaata
gatcttcttcagcaataccgtgcagcagtgattaaatttgataatgtgaataaggacctg
gatttacatttgcagtcactgaacactccagaaatgcaaaagaaaaaacaggaacttgct
gaacaagagaaaagcctcaagctagtaaaacaaaaattgggtatgactcctgctttatca
gataaaggtgctgaatcgttacttcaacctataatgttagatatatctgacacccccact
cctcccaaaagaatgagaaaagatacaatgaaaaaattgtacagctcagaagaatggatc
tcctctcctgcaaagcagcagcaacagcaagtgctgcaaatggccccttcagaacttaat
ggaactccacggaaaagaaaggcatag
DBGET
integrated database retrieval system
