Geospiza fortis (medium ground-finch): 102040197 Help Entry 102040197         CDS       T03755                                  Symbol TRAF6 Name (RefSeq) TNF receptor associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism gfr  Geospiza fortis (medium ground-finch) Pathway gfr04010   MAPK signaling pathway gfr04120   Ubiquitin mediated proteolysis gfr04140   Autophagy - animal gfr04144   Endocytosis gfr04620   Toll-like receptor signaling pathway gfr04621   NOD-like receptor signaling pathway gfr04622   RIG-I-like receptor signaling pathway gfr05132   Salmonella infection gfr05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:gfr00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     102040197 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     102040197 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     102040197 (TRAF6)    04140 Autophagy - animal     102040197 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     102040197 (TRAF6)    04621 NOD-like receptor signaling pathway     102040197 (TRAF6)    04622 RIG-I-like receptor signaling pathway     102040197 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     102040197 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     102040197 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:gfr04131]     102040197 (TRAF6)    04121 Ubiquitin system [BR:gfr04121]     102040197 (TRAF6) Enzymes [BR:gfr01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      102040197 (TRAF6) Membrane trafficking [BR:gfr04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     102040197 (TRAF6) Ubiquitin system [BR:gfr04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     102040197 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-TRAF_2 SlyX Med21 PspA_IM30 CEP104_ZnF Spc29 ATG16 PUMA_CC DUF16 zf-C2HC_3 CENP-F_leu_zip TMF_TATA_bd Sina_ZnF HMMR_N HAP1_N DUF7607 DUF1664 TMF_DNA_bd DUF7310 AAA_13 Cortex-I_coil Motif Other DBs NCBI-GeneID:  102040197 NCBI-ProteinID:  XP_014161853 LinkDB All DBs Position Un AA seq 509 aa AA seqDB search MVLHRSTSNAERTRPGRRIQLLVVTALSAPCHELAAERGQLRGPAWKSVGNIGISFLAFL HCRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNKGCSMKMELRHLEDHQLQCD FSTVECLQCQGTFPKNRLKEHMTQECLRRQVCCPNCATSMAYEDKELHDQTCPLANIYCE YCNTVLIREQMPNHYDNDCPTAPVSCFYSAFGCPEKMQRNELARHMQEFTQLHMRLMAQK FQNISVTAANPVPFINGLPFEPALFSHVSHAAYNCNPEVENFKETIQQLEGRLVRQDHQI RELIAKMETQNTHVAELKRTIRNLEEKITEMEAQQCNGIYIWKIEKFSELQKTQEEERPV VIHSPGFYTGKPGYKLCLRLHIQLPTAQRCANFISLFVHTMQGEYDGHLPWPFQGTIRLS ILDQSEGPERQNREEVMETKPELLAFQKPTVHRNPKGFGYVTFMHLETLKQRTFIKDDTL LVRCEVLTRLDLSSVRREGFQARSTDGAM NT seq 1530 nt NT seq  +upstreamnt  +downstreamnt atggttctccatagaagcaccagcaacgcggagcgaacacggcccggcaggaggattcag ctgctggtggtgacagctttgtcggcgccgtgccatgagcttgctgcagagcgagggcag ctgcgggggcctgcttggaaatctgttggtaatattggaatatctttccttgcttttctg cattgtagagatgcaggtcacaaatgtcctgtagacaatgaaattctgcttgaaaatcaa ctttttcctgacaacttcgccaaacgggaaatcctttcattaatggtcaaatgtcccaac aagggctgcagcatgaagatggagctcaggcacttagaggaccaccagctgcagtgtgat ttttccactgtggaatgcctacagtgccaaggaaccttcccaaagaaccgactgaaggag cacatgacccaagagtgtctgaggcgtcaagtgtgttgcccaaactgtgccacgtccatg gcctatgaagataaagagcttcatgaccaaacctgtccacttgccaatatatattgtgaa tattgcaacacagtgctcatcagggagcagatgcctaaccattatgataatgattgtcct actgccccagtgtcatgtttttacagtgcctttgggtgtcctgaaaagatgcaaaggaat gaactggcacgacatatgcaggagttcactcagttgcacatgaggttgatggctcagaag tttcagaatatcagtgttactgctgcaaatcctgtgcccttcatcaatggcctacccttt gagcctgccctgttctcacatgtgtcacatgctgcatacaactgcaatccagaagttgaa aacttcaaggaaactattcagcagttggaaggtcgtctggtgagacaagatcaccaaatc agggaactcattgctaaaatggagactcagaacacacacgtggcagaactcaaacgcact atacgaaatttggaggaaaagattactgaaatggaggcacaacaatgtaatggtatttat atctggaagattgagaaattcagtgaactgcagaaaacccaggaagaagaaagacctgta gtgatacacagtcctggcttctatacagggaagcctggctacaagctgtgcttgcgcctg catatccagttaccgactgctcagcgctgtgctaattttatctctctgtttgtgcacact atgcaaggggaatatgatggccacctgccctggcctttccaaggcaccattcgactttct attctggatcaatcagaaggcccagaaaggcagaaccgcgaagaggtgatggaaaccaag ccagagctactggccttccagaaaccgacagttcaccgcaatccgaaaggttttggttat gtgactttcatgcacctggagaccttgaagcagagaaccttcatcaaggatgacacgctg ctggtgcgctgcgaggtgctcacgcgcctggacttaagcagtgtccgcagggaaggcttc caggcccgcagcactgacggagccatgtag

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