Geospiza fortis (medium ground-finch): 102041469
Help
Entry
102041469 CDS
T03755
Symbol
SMG6
Name
(RefSeq) SMG6, nonsense mediated mRNA decay factor
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
gfr
Geospiza fortis (medium ground-finch)
Pathway
gfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102041469 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gfr03019
]
102041469 (SMG6)
03032 DNA replication proteins [BR:
gfr03032
]
102041469 (SMG6)
Messenger RNA biogenesis [BR:
gfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102041469 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
102041469 (SMG6)
DNA replication proteins [BR:
gfr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
102041469 (SMG6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
102041469
NCBI-ProteinID:
XP_005425483
LinkDB
All DBs
Position
Un
AA seq
1435 aa
AA seq
DB search
MSLQHGWSLCLGCLDAVLGPCTVRTALMPWTCYCWGLYRGSCVASCCSENMKEVKEPRHR
KDNRRPDQEIYKPGLSRLRSKLVSPKQEASEKERSRAEEDKDESAGDKDAVGVGAPAVED
CDKSDSPKQNGPSQEKEETETKGGLQSQENSSRQPIVDEWCPKAPRRTKKPDQQIYQPGK
RLHSAAKEPSLQSASEEIIGRMEQLKVEEEETEKSTGKDTNRKIKSSKEDREGSQAGEAL
KASRGDKGRRAERSDRVRRAGDEGLPGKLGSTKRYSRTDKRRSRYRTCSTSSAGSNNSTD
GALLVDGVERRQERARERIRPRKQLSVSSTDSLDDDRIDEAEVYVSSRSSDRRRHSEQSR
AARSESEWSSNGREVKGPFRVTFDSRTMNRDTGLADTDKKKSLKALEVSEARSQSREPQG
KGRGILFLPANTDLSASSVGVPEATHPGPRLLLGGAGSKGPRSRGRGGTARRLWDPNNPD
QKPALKSQTAQLHFLDTDDEVSPTSWGEARQAQPSYYKFQNSDNPYYYPRASGQGPQYPY
GGYSLQYPMGPANGVYPGAYYPGYPGQAGQYLCGPLPPTPLSPEMEQQMRNMQQQELSKL
LREAGNQEQQLSNLLSRDRISPEGLEKMAQLRVEMLQLYERCILMDIEFSDTQNVDQLLW
KNAFYQVIEKFRQLLKDPQGENAQEIRNKLLLLLDEGSSFFDGLLQKLQVSYQFKLEDYM
DGMAIRSKPLRKMVKYALISAQRCMICQGDICRYREQANDTANYGKARSWYLKAQQIAPK
NGRPYNQLALLAIYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKSEQMEQRK
HQVLDVSPNRRGKGKKSTLRQVGDDATRLEIWIHPSHPRSCQGHESSRDSEQDNGLGNLS
PSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEEVLREFQVLLQHSPPPIGSTRMLQLVA
INMFAVYNSQPKECISEDCRSVIQEQATALGLSMFALLVRRCTSLLRECVPVQPQEMEQE
DEEDDIKVSALPQDLKELLPSVKVWSDWMLGHPDTWNPPPTALELPKQVSVDVWATLADF
CNILTTVNQSEVPLYKDPDDDLALLSLEEDRLLSGFVPLLVAPQEPCYVERTSDKVIAAD
CKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDAMGKEMGSQEGKQLEDQEDDVRI
EAFEDDSETEGSGGEMDIKELRAKKQALARKVAEQQRRQDKIQAVLKDQSQMRQMELEIR
PVFLVPDTNGFIDHLGSLVTLLDCRKFILVVPLIVINELDGLAKGPEMEHRATGYARQVQ
ERARKSIEFLEERFESRDNCLRALTSRGNELESISFRSEDTTGQQGNNDDLILSCCLHYC
NDKAKDFMPSNKDDPIRLLREVVLLTDDRNLRVKALTRNVPVRDIPTFLKWAQEG
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgagtctccagcatggctggagtttgtgccttggctgcctggatgctgttcttggcccg
tgcactgtgaggacagcactgatgccttggacgtgttactgctggggtctgtacaggggc
agctgtgtcgccagctgctgctcagaaaacatgaaggaggtgaaggagccgaggcaccgc
aaagacaacaggcgcccagaccaggagatttacaagcctggcctctccagactgaggagc
aaacttgtatcaccaaagcaagaggcctcagagaaggaaaggagcagagctgaggaggac
aaggacgagagtgctggggacaaggacgctgtgggagtgggagctccagctgtggaggac
tgtgacaaaagtgatagccccaagcagaacggtccttcacaggaaaaggaagaaactgag
accaaaggtggcctgcaaagccaggaaaactcatccaggcagcccattgtggatgaatgg
tgtccaaaggcccccaggagaaccaagaagccagaccaacagatctaccagcctgggaaa
cgcctgcactctgctgctaaagagccctccctgcagtcggccagcgaggaaatcatcggg
aggatggagcagctgaaagtcgaggaagaagagaccgagaaaagcactggaaaagacacc
aacaggaaaatcaaatccagcaaggaggatagagaggggagccaggcaggggaagcactg
aaagcctccaggggggataaagggaggcgagcagagcgcagcgacagggtgaggagggcg
ggggatgaggggctgccggggaagctgggctccaccaagcgatactcccgcacggacaag
cggcgcagccgctaccgcacctgcagcaccagctcagccggcagcaacaacagcacggac
ggagccctgctcgtggatggcgtggagaggaggcaggagcgtgccagggagaggatacgt
cccaggaagcagctctctgtgtcttccacagactccctggacgatgacaggattgatgag
gctgaggtgtacgtctccagcaggagctcagacaggaggaggcattcggagcagagccga
gctgccaggagcgagagtgaatggagcagcaacggcagggaagtcaagggaccctttcga
gtgacatttgacagcaggaccatgaacagggacaccggcctggcagatacagataaaaaa
aagtccctgaaggccttagaggtttcggaggcgaggagccagagcagggagccccaaggg
aagggccgtgggattctgttcctgcctgctaacacggacctctctgccagctcagtgggt
gtccctgaagccactcaccccgggcccaggctcctgctgggaggggctggcagcaaaggg
ccccggagccggggccgaggtggcactgcccgccgcctgtgggacccaaacaacccggac
caaaaacccgccctgaagagccagactgctcagcttcacttcctagacacggatgatgaa
gtgagccccacctcctggggggaagcccgccaggcccagccctcctattataaattccaa
aactctgacaacccctattattaccctcgtgcctccgggcaaggcccccagtatccctac
gggggatattccctgcagtatcctatgggtccagccaacggggtgtacccaggagcttat
taccctgggtaccctggccaggcagggcagtacctgtgtggcccactccctcctactcct
ctgagccctgagatggagcagcagatgaggaacatgcagcagcaggagctcagcaaactc
ctgcgtgaggctgggaaccaggagcagcagctcagcaacctcctgtccagagaccgcatc
agcccggaggggctggagaagatggcccagctgagggtggagatgctgcagctctatgaa
cggtgcatcctcatggatattgagttctctgacacccagaacgtggaccagttgctgtgg
aaaaatgctttttaccaggtgattgagaaattccggcagctcctcaaggaccctcaggga
gaaaatgcccaagaaattcggaacaaactgctcttgcttctagatgagggctcttctttt
tttgatggcctcctccagaagctgcaggtctcctaccagttcaagctggaggactacatg
gatgggatggccatccgcagtaaacctctcaggaaaatggtgaagtacgccctgatcagt
gcccagaggtgcatgatctgccagggggacatttgccgctacagggagcaggccaacgac
acggcgaactacggcaaggcccgcagctggtacctgaaggctcagcaaattgctcccaaa
aacggccgcccgtacaaccagctggcacttctggccatctacacgaggaggaagctggat
gctgtgtactactacatgcgcagcctggctgccagcaaccccatcctcactgccaaggag
agcctgatgagtctgtttgaggagacaaaacgcaagtccgagcagatggagcagaggaaa
catcaggtgctggatgtgagccccaaccgccggggcaagggcaagaaatccacactgaga
caagtgggagacgatgccaccaggctggagatctggatccatccctcccacccccgctcg
tgccagggccatgagtccagccgggattctgagcaggacaacgggcttgggaacctcagc
cccagcgacctgaacaaaaggttcatcctcagttttctccatgcccatgggaagctgttt
accaggattgggatggagactttccctgccgtggccgaggaggtcctgagggagttccag
gtgctgctgcagcacagccctcctcccattggaagcacccgcatgctgcagctcgtggcc
atcaacatgtttgcagtgtacaactcccagcccaaagagtgcatctctgaggattgccgc
tccgtcatccaggaacaggccacagccctggggctctccatgtttgccctcctggtgagg
aggtgcaccagcctgctgagggaatgtgtgccagttcagccacaagagatggagcaggag
gatgaggaggacgacatcaaggtctctgccttgccccaggacctgaaggagctgctcccc
agtgtgaaggtctggtcggactggatgcttggccacccggacacctggaaccctcctcca
acggctcttgagctccccaaacaggtctcagtagatgtgtgggcgacgctggctgacttc
tgtaacatactgaccacagtgaatcagtcggaggtgcccttgtacaaggacccagatgac
gaccttgccctgcttagcctggaagaggatcggctgctctcgggcttcgttcccctgctg
gtcgccccccaggagccctgctacgtggagaggacctcggacaaggttattgcagccgac
tgcaagagggtcacagttctgaagtatttcctggaagccctttgtggacaagaagagcct
ttgctggcattcaagggtggaaaatatgtgtcagtggcacccgtcccagacgccatggga
aaggaaatgggaagccaagagggaaaacaactggaagatcaggaggatgatgtgaggatt
gaggcctttgaagatgactctgagactgaaggcagtggaggagagatggacatcaaggag
ctcagagccaaaaagcaagcactggccaggaaagtggctgagcagcagcgccgccaagac
aagatccaggccgtgctgaaagaccagagccaaatgaggcagatggagctggagatcaga
cctgtctttctggtcccagacaccaatggtttcatcgaccacctgggcagtttggtcacg
ctgctggactgcaggaagttcatcctggtggtgcccctgattgtgataaacgagctggat
ggcctggccaagggcccagagatggagcaccgggccacaggctatgcccgccaagtgcag
gagagagccaggaagtccatcgagttcctggaggagcgatttgagagcagggacaactgt
ttgagggctctgaccagccgaggcaacgagctggagtccatctccttccgcagtgaggac
accactggccagcagggaaacaatgacgacctgattctgtcctgctgcctccactattgc
aatgacaaggccaaggatttcatgccctccaacaaagacgatcccatccgtttgctcagg
gaagtggttttgctgacggacgaccggaacctgcgagtcaaagcgctgacccgcaacgtg
ccggtgcgggacatccccaccttcctcaagtgggctcaggagggctga
DBGET
integrated database retrieval system
