Geospiza fortis (medium ground-finch): 102045168
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Entry
102045168 CDS
T03755
Symbol
SCN4A
Name
(RefSeq) sodium voltage-gated channel alpha subunit 4
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
gfr
Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:
gfr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gfr04040
]
102045168 (SCN4A)
Ion channels [BR:
gfr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102045168 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
102045168
NCBI-ProteinID:
XP_005431291
LinkDB
All DBs
Position
Un
AA seq
1502 aa
AA seq
DB search
NYYFLEGALDALLCGNSSDAGKCPEGYTCMKAGRNPNYGYTSYDTFSWAFLALFRLMTQD
FWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYAEQNDATMLEEQQKEE
EFQQLMEQLKKQQEEQERLLQERSSSSNSLPSSVAGKGHDSDLNSDQDKAKDCNGQVVPK
ITLQRSDTVVDFNSTHEPEKPDLNHLTVGNQDGPGLEKRVGSAISVISNAVEELEEAHQK
CPPWWYKFAHTFLVWNCCRPWVKLKEFVKLVVMDPFVDLGITICIVLNTLFMAMEHYPMT
EEFENVLSVGNLVFTGIFTAEMVLKLIALDPYEYFQQGWNIFDSFIVTLSLVELGLANVQ
GLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFG
KSYIECVCKISVDCTLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQTMCLIVFM
MVMVIGNLVVLNLFLALLLSSFSADSLAASDDDGELNNLQIAIGRITRGIALGKAALLAL
LRRLCKGKKVAPEEEQEPGKRDNPALNHVDTALEPKLGYLDGITGKEHIFMDELEHMNFI
NNPSLTVQVPIASEESDLYEETSTQSDTEDTSKNPLSSDNASSVCSTVDYKPPAPEEEEV
AEEAEESNEPEECFTEGCVKRFPCLYVDITSEKGRIWWNLRKTCFRIVEHDWFETFIVFM
ILLSSGALAFEDIYIEQRKVIRTILEYADKVFSYIFVIEMLLKWVAYGFKVYFTNAWCWL
DFLIVDVSLVSLTANWLGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSI
MNVLLVCLIFWLIFSIMGVNLFAGKYYRCVNTTTGELFEIDVVNNKSDCMALLHTNEVRW
VNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSREIEEQPKYEINLYMYIYFVIFII
FGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPAN
KIQGKVFDFVTKQVFDITIMILICLNMVTMMVETDDQSELKTSVLYKINLVFIVIFTGEC
VLKMFALRHYFFTVGWNIFDFVVVILSILGIVLSDIIEKYFVSPTLFRVIRLARIRRLRR
LGRGACTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNFETFG
NSIICLFQITTSAGWDGLLNPILNSGPPDCDPELENPGSSVKGDCGNPAIGIFFFCSYII
ISFLIVVNMYIAIILENFSVATEESSEPLCEDDFEMFYETWEKFDPDATQFIAYSTLSDF
VDTLQEPLRVPKPNKIKLITMDLPMVAGDKIHCLDILFALTKEVLGDSGEMDALKATMEE
KFMAANPSKVSYEPITTTLKRKHEEVCATRIQRAFRRYLLRRSVKQASYMYRHSQDALGE
DAPEKEGLIATKMQEIYGNSGTDVETAPALGLKPIPSSETPQDAPEEAQVWRKEHVVKES
LV
NT seq
4511 nt
NT seq
+upstream
nt +downstream
nt
ccaattactacttcctggagggagccctggatgccctgctctgtgggaacagcagcgacg
ctgggaagtgccccgagggctacacgtgcatgaaggccgggaggaaccccaactatggct
acaccagctacgacaccttcagctgggccttcctggccctgttccgcctcatgacccagg
acttctgggagaacctcttccagctgacactgcgggcagcagggaaaacctacatgatct
tcttcgtggtggtcatcttcctgggctccttctacctcatcaacctcatcctggccgtgg
tggccatggcttatgctgagcagaacgatgccactatgctggaggagcagcagaaggagg
aggaattccagcagctcatggagcagctgaagaagcagcaagaggagcaggaaaggctgt
tgcaggagcgctcatccagcagcaattccctgcccagcagcgtggccgggaaggggcacg
actcagatctcaacagtgaccaggacaaggccaaggactgcaacgggcaggtggtgccca
agatcaccctgcagagatccgacaccgtggttgatttcaactccacccatgagccagaga
agccagacctcaaccacctcactgtgggcaaccaggatgggccagggctggagaagaggg
tgggaagtgccatcagtgtcatctccaacgctgtggaagagctggaagaagctcaccaga
aatgccctccctggtggtacaaattcgcccacacattcctggtctggaattgctgccgtc
cctgggtgaagctgaaggagtttgtcaagctggtggtgatggaccccttcgtggacctgg
gcatcaccatctgcatcgtgctcaacactctcttcatggccatggagcactaccccatga
cagaggagttcgagaacgtgctgagcgtggggaacctggtcttcacagggatcttcacag
cagagatggtcctgaagctcattgctctggatccctacgagtatttccagcagggctgga
acatctttgacagcttcatcgtcaccctgagcctggtggagctgggcctggccaacgtgc
aggggctctctgtgctgcgctccttccgcctgctgagggttttcaagctggccaagtcct
ggcccactctcaacatgctcatcaagatcatcggcaactccgtgggcgctctgggcaacc
tgacgctggttctggccatcatcgtcttcatcttcgccgtggtggggatgcagctcttcg
gcaagagctacatcgagtgcgtgtgcaagatctctgtggactgcaccctgccccgctggc
acatgcacgacttcttccactccttcctcatcgtcttccgcatcctctgcggggagtgga
tcgagaccatgtgggactgcatggaggtggccggccagaccatgtgcctcatcgtcttca
tgatggtcatggtcatcggcaacctcgtggtgctaaacctgttcctggctctgctgctga
gctccttcagcgccgacagcctggcagcatcagacgacgacggggagctgaacaacctgc
agatcgccatcggccgcatcacgcgcggcatcgccctgggcaaggccgcgctgctggcac
tgctgcgccgcctctgcaagggcaagaaggtggcacccgaggaagagcaggagcccggca
agagggacaaccccgcgctcaaccacgtggacacggccctggagcccaagttagggtacc
tggacggcatcacgggcaaggagcacatcttcatggatgagctggagcacatgaacttca
tcaacaaccccagcctgacggtgcaggtccccatcgcctccgaggagtccgacctctatg
aggagaccagcacccagtctgacaccgaggacaccagcaagaaccccctgagcagtgaca
acgcctcgtccgtgtgcagcacggtggattacaaaccccctgcacccgaggaggaggagg
tggcagaagaggctgaggagagcaatgagcccgaggagtgtttcactgaaggctgtgtga
agagattcccctgcctctacgtggacatcaccagtgagaaggggaggatctggtggaacc
tcaggaaaacctgcttccgcatcgtggagcacgactggttcgagaccttcatcgtcttca
tgatcctcctcagcagtggggcactggctttcgaggacatctacatcgagcagcgcaagg
tgatccgcaccatcctggaatatgcagacaaggtcttctcctacatctttgtcatcgaga
tgctgctcaagtgggtggcctatggcttcaaggtgtacttcaccaatgcctggtgctggc
tggatttcctcatcgtggatgtgtccctggtcagcctgactgcaaactggctgggatatt
ccgagctgggagccatcaaatccctgcggacactgagggctctgcgacccctgcgtgctc
tgtcccgcttcgagggcatgagggtggtggtgaatgccctggtgggtgccatcccctcca
tcatgaacgtcctgctggtctgcctcatcttctggctgatcttcagcatcatgggggtga
acctgttcgcagggaagtactacaggtgtgtcaacaccaccaccggggagctctttgaaa
ttgacgtggtcaacaacaagagtgactgcatggccctgctccacaccaacgaggtcagat
gggtcaatgtcaaggtcaacttcgacaacgtgggcctgggatacctgtccctgctgcagg
tggcaaccttcaaaggctggatggacatcatgtatgcagccgtggactcccgtgagattg
aagagcagccaaagtacgagatcaacctctacatgtacatctacttcgtcatcttcatca
tcttcggggccttcttcaccctgaacctcttcatcggcgtcatcatcgacaacttcaacc
agcagaagaaaaagtttggaggcaaagacatcttcatgacagaagagcagaagaaatact
acaatgccatgaagaagttgggctccaagaaaccccagaagcccatccccaggccagcga
acaaaatccaagggaaggtgtttgacttcgttaccaagcaagtgtttgacatcaccatca
tgatcctgatttgcctgaacatggtgaccatgatggtggaaacagatgaccagagcgagc
tcaaaacctctgtcctctacaagataaacctggtcttcatcgtcatcttcactggcgagt
gcgtgctcaagatgtttgccctccgccactacttcttcactgtgggctggaacatctttg
acttcgtggtggttatcctctccatcctaggtatcgtcctctcagacatcatcgagaagt
actttgtgtcccccaccctcttcagggtgatccggctggcgaggatccgccggctgcgcc
ggctgggtcgaggggcctgcacgctcctctttgccctgatgatgtctctgcccgccctgt
tcaacatcggcctcctgctcttcctcgtcatgttcatctactccatcttcggcatgtcca
acttcgcctacgtcaagaaggagtcggggatcgatgacatcttcaacttcgaaacctttg
ggaacagcatcatctgtctcttccagatcaccacgtcagcggggtgggatgggctcctca
accccatcctcaacagcggccccccggactgcgaccccgagctggagaaccccgggagtt
cagtgaagggagactgtgggaaccccgccatcggcatcttcttcttctgcagctacatca
tcatctccttcctcatcgtggtgaacatgtacattgccatcatcctggagaacttcagtg
tggccacagaggagagcagcgagcccctctgtgaagatgattttgaaatgttttatgaaa
cttgggagaagttcgacccggacgccacccagttcatcgcctacagcaccttgtctgact
ttgtggacaccttgcaggagccactccgagttcccaagcccaacaagatcaaactcatca
ccatggatctaccaatggttgctggggacaaaatccactgcctagacattctctttgccc
tgactaaggaagtgctgggagactcgggagagatggatgccctgaaggccaccatggagg
agaagttcatggctgccaacccctcgaaggtttcctatgaacccatcaccaccaccctga
agaggaaacacgaggaggtgtgtgctaccaggatccagagggcgttccggaggtacctcc
tgcggcgctcggtcaagcaggcgtcctacatgtacaggcacagccaggacgcgctgggcg
aggacgcgcccgagaaggaagggctgatcgccaccaaaatgcaggagatctatgggaact
ctgggacagatgtggagacagcccctgccctgggcctcaagcccattcccagctcagaga
cgccccaggatgctcctgaggaagcacaggtttggcgtaaggaacacgtggtgaaagagt
cgctggtgtaa
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integrated database retrieval system
