Gemmobacter fulvus: KM031_02525
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Entry
KM031_02525 CDS
T07830
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gfu
Gemmobacter fulvus
Pathway
gfu03030
DNA replication
gfu03410
Base excision repair
gfu03420
Nucleotide excision repair
gfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KM031_02525 (ligA)
03410 Base excision repair
KM031_02525 (ligA)
03420 Nucleotide excision repair
KM031_02525 (ligA)
03430 Mismatch repair
KM031_02525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gfu03032
]
KM031_02525 (ligA)
03400 DNA repair and recombination proteins [BR:
gfu03400
]
KM031_02525 (ligA)
Enzymes [BR:
gfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KM031_02525 (ligA)
DNA replication proteins [BR:
gfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KM031_02525 (ligA)
DNA repair and recombination proteins [BR:
gfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KM031_02525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KM031_02525 (ligA)
MMR (mismatch excision repair)
DNA ligase
KM031_02525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KM031_02525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QWK90808
UniProt:
A0A975P870
LinkDB
All DBs
Position
complement(524707..526821)
Genome browser
AA seq
704 aa
AA seq
DB search
MPDMKPVETLTQAEARAELARLALLIAAANMAYHTQDTPEISDADYDALKQRNAAIEARF
PGLKRPDSPSDQIGAAPADGFGKVRHDVRMLSLENAFQVEDVADFEDRIRKYLGHEGPLT
FTAEPKIDGLSLSLRYEGGHLVQAATRGDGETGENVTENARTIADIPHTVIGAPEVLEVR
GEVYMSHADFAALNQRQQAAGEKSFANPRNAAAGSLRQLDARITAARPLRFFAYSWGALS
EPLAETQAEAIARLAKLGFQINPLTRLCHSPEELLAQYRSIEAQRATLGYDIDGVVYKVN
DLGLQRRLGFRSSTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLKPVTVGGVV
VSNATLHNEDYIAGRDSRGQVIRDGKDIRIGDWVQVYRAGDVIPKLADVDLSQRDPAAQA
YVFPTVCPECGSDAIREEGDAVRRCSGGLICPAQAVERLKHFVSRNAFDIEGLGAKQIEA
FYKDGWITRPADIFTLEERFGSGLQQVKNREGWGAKSADNLFAAIRDKRQIPLNRLIFAL
GIRHVGETSASLLATHYGNWAAFEAAMAAATPGEGPEWAELTAIDGVGAVLAGSLVTAFH
HPAERAAIDALVAHLSVQDVQRRAPVDSAVAGKTLVFTGTLEKMSRAEAKARAEALGAKV
AGTVSAKTDLVIAGPGAGSKAKQAAALGVQIIDEEAWITLAGQA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgccggacatgaagcccgtggaaacgctgacgcaggccgaagcgcgcgccgaactggca
cgccttgccctgctgattgctgcggcgaatatggcctatcacacccaggatacgcccgag
atcagcgatgcggattatgacgcgctgaaacagcgcaatgcggcgattgaggcgcgcttt
cccggcctgaaacggccggacagccccagcgaccagatcggggcggccccggccgatggc
tttggcaaggtgcgccatgacgtgcgcatgctcagccttgaaaacgcctttcaggtggag
gatgtggcggatttcgaggatcggatccgcaaatacctcggccatgaaggcccgctgacc
ttcacggcggaaccgaagattgacgggctctcgctcagcctgcgttatgagggcgggcat
ctggtgcaggcggccacgcgcggcgatggcgaaaccggcgagaatgtcaccgaaaacgcc
cgcaccattgcggatattccgcacaccgtgatcggcgcgcccgaggtgcttgaggtgcgg
ggcgaggtttatatgagccatgccgatttcgcggccctgaaccagcgccagcaggcggcg
ggcgagaaaagcttcgccaacccgcgcaatgccgccgccggatccctgcgccagctggat
gcccgcatcaccgccgcccgcccgctgcggttctttgcctatagctggggggcgctgtcg
gaaccgctggccgaaacgcaggccgaggcgattgcccggctcgcgaaactggggtttcag
atcaacccgctgacccggctgtgccacagccccgaagagctgctggcgcaatatcgcagc
atcgaggcacagcgcgcgaccttgggctatgacatcgacggcgtggtctacaaggtgaac
gacctcggcctgcaacggcgcctcggcttccgctcgtccacgccccgctgggccatcgcg
cataaattccctgccgaactggcctggacgcggctggaggcgatcgacattcaggtgggc
cgcaccggcgcgctcagcccggtggcgcggctgaaacccgtcaccgtgggcggtgtcgtg
gtgtcgaacgccacgctgcacaacgaggattacatcgccgggcgcgattcgcgtggccaa
gtgatccgcgacggcaaggacatccgcattggcgactgggtgcaggtctaccgcgccgga
gatgtgatcccgaaactggcggatgtggatctgtcgcagcgcgaccccgccgcgcaagcc
tatgtttttccaacggtgtgcccggagtgtggctctgacgcgatccgcgaggagggcgat
gccgtgcgccgctgctccggcgggctgatctgcccggcgcaggcggtggagcggttgaag
catttcgtcagccgcaatgcctttgacatcgaagggctgggggcaaagcagatcgaggcc
ttctacaaagatggctggatcacccggcccgccgatatcttcacgctggaagagcggttt
ggcagcggcttgcagcaggtgaaaaaccgcgaaggctggggcgcgaaatcggcggacaac
ctgttcgcggccatccgcgacaaacggcagatcccgctcaaccggctgatcttcgcgctg
gggatccgccatgtcggcgaaacctccgccagtttgctcgccacgcattacggcaattgg
gcggcattcgaggcggcaatggcggcggcgacccccggtgaaggcccagaatgggcggaa
ctgaccgccatcgacggcgtgggcgcggttctggcaggctctttggtgacggccttccac
catccggcggaacgcgcggcgattgatgcgctggtggcgcatctttcggtgcaggacgtg
cagcgccgcgcgccggtcgacagcgcggtggcgggcaagacgctggtgttcacgggcacg
ctggaaaaaatgagccgggccgaggccaaggcgcgcgccgaggctctgggggccaaggtg
gccggaactgtcagcgccaagaccgatctggtgatcgccgggccgggtgccggatcgaag
gccaaacaggccgcggcgctgggggtgcagatcatcgacgaagaggcgtggatcaccctt
gccgggcaggcgtga
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integrated database retrieval system
