Gallus gallus (chicken): 421057
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Entry
421057 CDS
T01006
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gga
Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:
gga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gga03036
]
421057 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
gga03400
]
421057 (SMCHD1)
Chromosome and associated proteins [BR:
gga03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
421057 (SMCHD1)
DNA repair and recombination proteins [BR:
gga03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
421057 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
421057
NCBI-ProteinID:
XP_015133437
CGNC:
10985
Ensembl:
ENSGALG00000014811
LinkDB
All DBs
Position
2:complement(101090882..101163409)
Genome browser
AA seq
2031 aa
AA seq
DB search
MAAAGGSRGARKSMQLSPRGGGDRTVFLFDRRREQADPDEKVLSYGKNSYRGFRSAVCQA
FGISPDENFVITTTNRKEITEDNFKELVQDGVTLYLLQSVDQTLLSATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATARNTSIRSIQIKLLFDDSNGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYCGFIRNRKPSDSTHITNDDE
RFLHNLILEERDKESFTAVIITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEAN
AVTKSVSPFNNIDIEISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKALVDGDGI
VEGIIRYHPFLYDKETFPDDPSFPSRLNDDDDDDDCLMIEKGARGKRPIFECFWNGRLIP
YTSVEDFDWCAPPKKRGLAPVECYNRISGTLFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWAIYSA
IEWDGKTFKTGQLVKTIKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEM
KTVPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRLAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPAGNKEIISHISQHGGKWPYWFKKMEN
LQKLGNYTLKLQVVLNESNADTYAGRPLPSKTFKFTIVEGKAEKFSVGLLELPFRVGVPF
NIPLELQDEFGHATRLTNDIKPILEASGLTLQYEELTAGANCIIKGVTAKGCVNSCQGKN
FNLKVTLPGLKEDTKILKIRLQPGPPHRLKVKPDSEILKIENGTAFPFQVEVLDESGNVT
VQPKLIVHCKFSGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEIPSCKDV
PPVEKMIKLLPSSHVARLQILSMNGQKAIQIKHQDEINWVAGDIMHNLIFQMYDEGEREI
HITPTVAEKIKVNWTPRINREQLMQGLLPDVKVPTSVKDVRYCLISYLDDHVSLESAFTI
RPLPDEPRHIKCKLEGSNTLQLGEDLQGEIDVMITDQYGNQVQTVTSACIGYLGVAGPGL
DKSNLQITWQESTFTMRVKGIRFKPCALGSKELCFAWREFSDFIRVNLTAGSPAKLQIMD
WPELEKPVVVINGRELLKPLVVQLCDQWGNPSPEPNVKISLMKSSNLKIVPSNHQHKTDD
NGRANLGVISIHAPRGEHTLQLRASYNKIALECPIITLNVLPDPDKPVRLNVKYDKNAAF
PAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWKGQGSGNRIPTDVTAFSCSKVKDDKE
DGFFYFRDKVIPERVGAYSIQFTFAMDKTNMLISEQIVVEVVPNDPVRLLPDSLPATPTV
SNVRTITSRTLVKDLCLHIMDEYNNHTGADLVGRIIAKIKSPNEDDTEIPQFQGKISTIE
FPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYRLSFMFYNDFKKQQQM
ATLTRERDKLSQSIGVYRNWFDTTNQLVNEMRCQVKEAETRETHLKNELRKHQIELPETN
ILQYVDSLIKQKMLDRDGVMKQPRRTCTLPNYPKGNQDVLGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKICFRP
VGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKLYSAFTGQIDLLQQYRAAVVKLDDVN
KDLDLHLRSLNTPEILQKKQELAEQERSLKLIEHKLGMTPSDKVSESLLQPAILDMPDTP
IPPKRMRKETVKKLYSSEEWVASAAKKQLLQQQPLQIPPSELNGTARKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcagccgcggggcccgcaagtcgatgcagttgtctccacgcgga
ggcggggatcgcaccgtctttctcttcgaccggcgccgagagcaggcggatccggacgag
aaagtgctcagctacggcaagaacagctaccgcggcttccgcagcgccgtgtgccaggca
tttggcatatctcctgatgaaaactttgttatcaccacaacaaacaggaaagaaattaca
gaagacaacttcaaagaacttgttcaggatggagttactctgtatctactacagtcagtt
gaccaaaccctgctttcagcaacaaaggagagaattgacttcctgccccactatgataca
cttgtcaaaagtggcatgtatgaatactatgccagtgaagggcaaaatcctttgccattt
gctcttgccgagttgattgacaattctctatcagctacggctcgaaatacttctattcga
agcatacagattaaattgttatttgatgactccaatggaaaaccagctgttgcagtgatc
gataatggaagaggaatgacttctaaacagcttaacaactgggcagtatatagattgtca
aagtttacaagacaaggtgactttgagagtgatcattcaggatacgttcgccctttgcca
gtgcctcgtagtttaaatagtgatatctcatattttggagttggaggtaaacaggcagtg
ttcttcgttgggcagtctgccagaatgataagcaaacctgcagattctcaggatgtacat
gaacttgtcctttcaaaagaggattttgaaaagaaagagaaaaacaaagaagcaatatat
tgtgggttcattcgaaacagaaagccatctgactctactcacatcacaaatgatgatgaa
agatttcttcataatctaatactagaagagagggataaagagagtttcacagcagttatc
attacaggtgttcaaccagaacatatccagtacttgaaaaactactttcatctttggaca
aggcagctggcgcatatctatcactattatatccatggaccaaaaggaaatgaagctaat
gctgtaacaaaaagtgtaagcccattcaacaacattgacattgagatttctatgtttgaa
aaaggaaaagtaccaaaaattgtcaatcttagagagataaaagatgatatgcagacactg
tatataaatactgcagcagatagttttgagtttaaagcacttgttgatggagatggtata
gtggaaggaataatccgataccatcctttcctgtatgataaagaaacatttcctgatgat
ccaagttttccatcaagattaaacgatgacgatgatgatgatgactgcctaatgatagaa
aagggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaattcct
tacacaagtgtggaagacttcgactggtgcgctcctccaaagaagagaggattggcacca
gttgaatgctacaacaggatttctggtacattgtttaccaatgataagtttcaggtcagc
acaaacaaactcactttcatggatctagagctgaagttaaaagacaagaatactctgttt
acaagaattttcaacggacaggagcagagaatgaaaattgacagagaatttgctttgtgg
ctcaaagattgtcatgagaaatatgacaaacagataaaattcacagtctttaaaggaata
actacacgtactgatttgccatccaaaagaatgcagagcccttgggcaatatattctgca
atagagtgggatgggaaaacgttcaaaactgggcagctggtgaaaaccattaagactctt
ccaatattctatggaagtattgagaaattttttttgtatggagaccatgatggggatata
tttgccactggtggagaggttcaaattgctttggaacctcaggcattgtatgctgaaatg
aaaactgttccaatctcaaaactagacagaacagtgtctgacaaagctgttaaaaaatat
atagaggatgaaatggcaagacttccagacaaactgtcagtaacttggcctgaaggagat
gagttattgccaaatgaaacaaggttggctggtacaccaataggggcattaagaatagaa
attctgaacaaaaaaggagaagcaatgcaaaagctgccaggtacaagccatggaggctca
aagaaacttcttgtcgaactcaaggttattttacattcacctgctgggaataaagaaata
atttctcacataagtcagcatggaggcaaatggccatactggtttaaaaaaatggagaat
cttcagaaacttgggaactacactttgaagctgcaggtagtcttaaatgaaagtaatgca
gacacttacgcaggaaggcctctgccatctaaaacatttaaatttactattgtagagggc
aaagcagagaaattttcagtgggtcttttggagcttccttttcgggttggagtacctttt
aatattcctttggaattgcaggatgagtttggtcacgcaacgcggttgacaaatgacatt
aaaccaattcttgaagctagtggattgactttgcaatatgaagagttaactgcaggagca
aattgcatcattaagggtgtcactgctaaaggctgtgtaaatagttgccagggcaagaac
tttaatctgaaggttactcttcctggattgaaagaggacacgaaaattcttaaaataaga
ttgcagcctggccctccacatcgattgaaagtaaaaccagattctgaaattcttaagatt
gaaaatggtacagctttcccctttcaggtcgaagtactggatgaatcaggcaatgtaaca
gtgcagccaaaactgatagttcattgcaagttttcaggtgcttcaaacctacctgtttat
tctgtggactgcagtaacgcaggaacgaacattttaactggtccagtcatacacgtacag
aatataaagaaagaccagatgctcaaagcaaggattgaaataccgagttgtaaagacgtg
ccaccagtggagaagatgataaaacttcttccaagcagtcatgttgcaagactgcagatc
ttgagtatgaatggacaaaaagctattcaaattaaacatcaggatgaaatcaactgggtt
gctggagatatcatgcacaaccttatatttcagatgtatgatgaaggagaaagggagata
cacataactccaactgtggcagaaaaaattaaggttaactggacacccagaattaacaga
gaacagttgatgcagggattgttacctgatgtgaaagtaccaacatcagtgaaagatgta
cgctactgtctaataagttatcttgacgaccatgtgtctttggagagtgcgtttacaatc
agaccacttcctgatgaacccagacacattaaatgcaaattagaaggatcaaacacacta
cagttgggggaggatctacagggtgaaattgatgtaatgatcacagatcagtatggaaat
caggttcaaacagtgacatctgcatgtataggttacctaggagttgcggggcctggactt
gataaatcaaatttgcaaataacttggcaggaaagtacatttacaatgagagtcaaaggt
attcgatttaaaccttgtgcacttggaagcaaggaactgtgctttgcttggcgtgaattt
tctgattttatccgagtaaatttaactgcaggatcacctgctaaattgcaaattatggat
tggccagagttagaaaagcctgttgtagtgattaatggtagagaactgctgaagcccctt
gttgttcaactgtgtgatcagtggggaaatccatcccctgaacctaatgtcaaaatcagt
cttatgaagagcagcaacctaaagattgttccttcaaaccaccaacataaaacagatgac
aatggtagggctaacctgggagttattagtattcatgcacctaggggagagcacacttta
cagcttagagcttcatacaacaagattgcattagagtgtcctattattacattaaatgtc
cttcctgatcccgacaagcctgtccgcttgaatgttaaatatgacaaaaatgctgctttt
ccagcaggaggcacctttcctgattttatggttagtgttctttctgaagatgacaatatt
atcaaaaatattaatccagcacgtatttctatgaaaatgtggaaaggacagggcagtgga
aataggataccaactgatgttacagcatttagctgtagtaaagtaaaggatgacaaggaa
gatggcttcttttatttcagggataaagtgattccagagagagtgggcgcatacagtatc
cagtttacttttgcaatggataagacaaacatgctcatcagtgaacagattgtagttgaa
gttgtacctaatgacccagtccgcttgttacctgattctttaccagctactccaacagtt
tccaatgttcgaacaatcactagccgtacactggtcaaggatttatgcctccacataatg
gatgaatacaacaaccacactggagctgacttagttggaagaataatagcaaaaattaag
agccccaatgaagatgatacagagatcccacagtttcaggggaagatcagtacaattgag
ttcccatttgacagaggatcagctgaaattaacctagtgctggctgaaaacagtcctgga
agagatagtactgaatatattcttgtatttgagccagatctgccagctttgaaaaaacct
ttggaaccataccgtctgtcatttatgttttacaatgatttcaagaagcaacaacagatg
gcaacacttacgagggagagagacaaattatctcagtccataggtgtttacagaaattgg
tttgatactactaatcagcttgtaaatgaaatgagatgtcaggttaaagaagctgaaaca
agagaaactcacttgaagaatgagctgaggaaacaccagattgaactaccagagacaaac
atacttcagtatgtagattctctcataaaacaaaagatgttggatcgggatggagtaatg
aaacagccaaggcggacttgtacccttccaaactatccaaaaggcaaccaagatgtttta
gggaagattgcacatttagcacaaattgaggataatgaagcagcaaaagttatctcttgg
catttggccagcgacatggactgtgtagtcacattgactactgaagctgctcgttctatt
tttgatgaaacgcaaggtcgacagcaagtgttacctcttgattctatttacaagaagaca
ctccctgattggaacaggcctttacctcacttaagaaatggaaaaatctgcttcagacct
gttggaaatcctgtatttgccagagatctgttaacatttccagataatgtagagcattgt
caaacagtgtttgggatgcttttgggtgatactatcatcatagataacttggatgctgca
aaccattacagaaaagaggttgtaaaaattacacactgccctacattgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggaggccttcagaacaaagctcctccaatg
gacaaactcagaggaatggtatttggagcacccgtgccaaaactatactctgctttcact
ggacagatagatcttcttcagcaataccgtgcagcagttgtaaaacttgatgatgtgaat
aaagacctcgatttacatttgagatcacttaacactccagaaatcctacagaaaaaacag
gagcttgccgaacaagagagaagcctcaagcttatagaacacaaattgggtatgactccc
tcagataaagtctctgaatcgttacttcagcctgcaatccttgatatgcctgacactccc
atccctcccaaaagaatgcgaaaagaaactgtaaaaaaattgtatagctcagaagaatgg
gttgcctctgctgctaagaagcagctgctgcagcagcaaccactgcaaataccaccttca
gaacttaatggaactgcacgaaagagaaaggcatag
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