Gavialis gangeticus (Gharial): 109298727 Help Entry 109298727         CDS       T07453                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism ggn  Gavialis gangeticus (Gharial) Pathway ggn04115   p53 signaling pathway ggn04145   Phagosome ggn04148   Efferocytosis ggn04350   TGF-beta signaling pathway ggn04510   Focal adhesion ggn04512   ECM-receptor interaction ggn04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ggn00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     109298727 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109298727 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     109298727 (THBS1)    04148 Efferocytosis     109298727 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     109298727 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     109298727 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     109298727 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ggn04131]     109298727 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ggn00536]     109298727 (THBS1) Membrane trafficking [BR:ggn04131]  Endocytosis   Phagocytosis    Opsonins     109298727 (THBS1) Glycosaminoglycan binding proteins [BR:ggn00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109298727 (THBS1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C TSP1_ADAMTS EGF_3 cEGF EGF_CA TSP1_CCN Laminin_G_3 Laminin_G_2 EGF Motif Other DBs NCBI-GeneID:  109298727 NCBI-ProteinID:  XP_019374521 LinkDB All DBs Position Unknown AA seq 1176 aa AA seqDB search MGVSSGLVLLLVLGICEANRIAESGGDDNSVFDLFELIGITRKAPGRRALGVYLVKGAEI SSPAYRIEDASRIPAVSDDKFQDLLDAIYAEKGFILLANLRQPKKSRGALLAVERKDGSG HVFNLVSNGKADTLDLSLSGDGKQQVVSVEDVMLADGHWKNITLFVQEDRAQLYVGCEKM ENAELDIPIQNIFTRDLATSARLRVAKGGVNDNFQGALQNVRFVFGTTLEAILRNKGCSS STSAIITLDNPINGSSPAIRTNYIGHKTKDIQAICGFSCDELTNMFVELQGLRSMVTTLQ DRVRKVTEENEFIAKVAQITPGVCIHNGILHKNKEEWTIDSCTECTCQNSATICRKVSCP LMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCE GSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGMITRIRLCNSPVPQLNGKPC AGEARETKSCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKDCVGE PTGTRVCNKQDCPVDGCLSNPCFVGTTCTSSPDGSWKCGACPTGYHGDGVHCKDIDECQE VPDVCFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSIEDATANKQVCKPRNPCTDGT HTCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCK KDNCPNLPNSGQEDYDKDGIGDACDSDDDDDNIPDDRDNCPFIYNPQQYDYDRDDVGDRC DNCPYNHNPDQTDTDNNGEGDACAVDIDGDGILNEGDNCQYVYNVDQRDTDLDGVGDQCD NCPMEHNPDQADTDSDRIGDKCDSNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDAC DHDDDNDGIPDDKDNCRLVANPDQVDSDGDGRGDACKDDFDQDNVPDIDDICPENVDISE TDFRRFQMVPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFFI NTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPGE HLRNALWHTGNTTGQVQTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMAD SGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDP NT seq 3531 nt NT seq  +upstreamnt  +downstreamnt atgggggtgtccagcggactcgtgctccttctcgtgctgggcatctgtgaggccaaccgg attgcggagtccgggggagatgataatagcgtgtttgacctctttgagctcattggcatc actcgtaaggcacctgggcgccgggcactaggggtgtatctggtgaagggagctgagatc tcaagccctgcctaccgcattgaggatgccagccgcattcctgctgtctctgatgacaag ttccaagacctgctggatgccatctatgctgagaagggctttattctgctggccaatctc cggcagcccaaaaagagccgtggcgcactgctggctgtggagcgcaaggatggctctggc catgtcttcaacctggtatccaatggcaaggcagacaccctggacctgagcctatcgggc gatggcaagcagcaggtcgtgtcagtggaggatgtcatgctggctgatgggcactggaag aatatcaccctgtttgtgcaggaggaccgtgcccagctctatgtagggtgtgagaagatg gagaatgctgagctggatattcccattcagaatattttcaccagggacctggccaccagt gccaggctccgcgttgccaaggggggagtcaatgacaacttccagggagcactgcagaat gtgcgttttgtctttggaacaaccctggaagccatcctgaggaataaaggttgttcaagt tccactagtgctatcattacattggacaatccaatcaacggctccagtccagctatacgt accaactatattggccacaaaacaaaggacatccaggccatctgtggcttttcctgtgat gaactcacaaatatgtttgtggaattgcaaggattacggtccatggttacaactcttcaa gacagagtgcgcaaagtgactgaagaaaatgaattcattgccaaagtagcccagatcact cctggggtgtgcattcacaatggaattctgcacaaaaataaagaagagtggactattgac agctgcactgaatgtacttgccagaactctgccaccatatgccggaaagtgtcatgtcct ctcatgccttgttccaatgccactgttcctgatggagagtgctgtccacgatgctggcct agcgactatgcagatgacggttggtctccttggtctgaatggacttcatgctctgtgacc tgtggaaatgggattcagcagaggggtcggtcttgtgatagtctcaataaccgttgtgaa ggttcttctgtacagactcggacctgccacctccaggagtgtgataagagatttaaacag gatggtggttggagccactggtcaccctggtcatcttgttctgttacttgtggcacgggc atgatcactagaatccgtctctgcaactctccagttccacagttgaatggcaaaccttgt gcaggtgaagcaagagaaaccaaatcctgccagaaagatccttgtccaataaatggaaac tggggaccctggtctccatgggatgcctgtacagtcacatgtggaggaggccttcaaaaa cgcagtcgtctttgcaataaccctgagccccagtatggcgggaaggattgtgtaggtgaa cccacagggactcgggtatgcaacaaacaggactgtccagttgatgggtgtttgtctaat ccctgctttgtgggaactacatgtaccagttctcctgatggctcctggaagtgtggtgcc tgccccactggttaccatggagatggtgttcattgtaaagatatcgatgagtgtcaagag gttcctgatgtctgctttgtcttcaatggagtgcacaggtgtgagaacactgaacctgga tacaactgcctgccttgcccaccacgttttactggaacacagccttttggccgcagtatc gaggatgctacagctaacaagcaggtctgtaaaccacgtaatccatgcacagacggaact cacacctgcaacaagaatgctaagtgcaattatcttggccacttcagtgatccaatgtac cgctgtgaatgtaaacctggctatgctggcaatggcattatctgtggggaagataccgac ttggatggctggccaaatgagaaccttgtctgtgttgccaatgccacgtaccactgcaaa aaagataattgtcccaaccttcccaactctggccaagaagactacgataaagatggaatt ggtgatgcctgcgacagtgatgatgatgatgataacatcccagatgatagggacaattgc ccatttatttacaacccacagcaatatgactatgatagggatgatgttggtgaccgttgt gacaattgcccctacaaccacaaccctgatcagacagacactgataacaatggtgaaggt gatgcatgcgctgtggatatcgatggagatggcattctaaatgaaggggacaactgtcaa tatgtctacaatgtagaccagagagatacagatttggatggtgttggagatcagtgtgac aattgtcctatggaacacaatccagaccaggcagacacagactctgaccgcataggagat aaatgcgacagcaaccaggacatagatgaagatggccatcaaaataaccttgataactgc ccctatgtacctaatgccaatcaagctgaccatgacaaggatggcaaaggtgatgcctgt gaccatgatgatgataatgatggtatccctgatgacaaagataactgcagattggttgcc aacccagaccaggtggactctgatggtgatggtcgtggcgatgcttgcaaagatgacttt gaccaagataatgtgccagatattgatgacatttgtccagaaaatgttgatatcagtgaa accgatttccgacgatttcagatggttccccttgatcccaagggaacatcccaaaatgat cccaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgatcct ggtcttgcagtgggttttgatgaattcaatgctgtagacttcagtggcacattcttcatc aacacagagagggatgatgactatgctggctttgtatttggttatcagtctagcagccgt ttctacgtagtgatgtggaagcaaatcacccagtcctactgggactcgacaccaaccaaa gctcagggatactctggtctttctatcaaagtagtgaattccaccacaggtccaggagag cacctgcgtaatgctctgtggcacacaggaaacactactggacaagtgcaaaccttgtgg catgaccctcgtcacataggctggaaagattttactgcctacagatggcgtctcagccat agaccaaagactggctacattagagttgtaatgtatgaagggaagaaaatcatggctgat tcaggaccaatctatgacaaaacttatgctggtggtcggttaggattatttgtcttttca caagaaatggtgttcttctcggatctcaaatatgaatgcagagatccgtaa

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