Gavialis gangeticus (Gharial): 109298950
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Entry
109298950 CDS
T07453
Symbol
TRAF6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ggn
Gavialis gangeticus (Gharial)
Pathway
ggn04010
MAPK signaling pathway
ggn04120
Ubiquitin mediated proteolysis
ggn04140
Autophagy - animal
ggn04144
Endocytosis
ggn04517
IgSF CAM signaling
ggn04620
Toll-like receptor signaling pathway
ggn04621
NOD-like receptor signaling pathway
ggn04622
RIG-I-like receptor signaling pathway
ggn05132
Salmonella infection
ggn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ggn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109298950 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109298950 (TRAF6)
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
109298950 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
109298950 (TRAF6)
04140 Autophagy - animal
109298950 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
109298950 (TRAF6)
04621 NOD-like receptor signaling pathway
109298950 (TRAF6)
04622 RIG-I-like receptor signaling pathway
109298950 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109298950 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
109298950 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ggn04131
]
109298950 (TRAF6)
04121 Ubiquitin system [BR:
ggn04121
]
109298950 (TRAF6)
Enzymes [BR:
ggn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109298950 (TRAF6)
Membrane trafficking [BR:
ggn04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
109298950 (TRAF6)
Ubiquitin system [BR:
ggn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
109298950 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-TRAF_2
Med21
RING_XB3-XBAT31
TRAF3_RING
SlyX
PspA_IM30
zf-RING_11
Sina_ZnF
U-box
ATG16
UPF0242
DUF16
Motif
Other DBs
NCBI-GeneID:
109298950
NCBI-ProteinID:
XP_019374926
LinkDB
All DBs
Position
Unknown
AA seq
545 aa
AA seq
DB search
MSLLQSDNSCGARELESGCCAAMASACSAGAKEDSASVSSGTGNAPNSFTEETQGYDVEF
DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD
NFAKREILSLTVRCPNKGCRLKMELRHLEEHQLQCNFSCVECPQCLGSFQKNQMKEHMTQ
ECPRRKVCCPNCATSMAYEDKEHHEEHCPLANVFCEYCNTVLIREQMPNHYDNDCPTAPV
PCTYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQTLLSVSVTATVPVSFSNGPSFEPGL
FSHPSSSPYECNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQSINMVELKRTIRNL
EGKIAEMEAQQCNGIYIWKIENFSSLLKAQEEERPVVTHSPGFYTGKPGYKLCLRLHIQL
PNSQRCANFISLFVHTMQGEYDSYLPWPFQGTIRLSILDQSEGPERLNHEEVMEAKPELL
AFQRPTVHRNPKGFGYVTFMHLQALKQRTFVKDDTLLVRCEVVTRLDFNSLRREGFQPRS
TEGVV
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctacaaagtgataacagctgtggagccagagaactggagagtggctgctgt
gcagccatggccagcgcatgcagtgctggagcaaaagaagacagtgcaagtgtcagcagt
gggactggaaatgcaccaaattccttcacagaagagacccagggatatgatgtggagttt
gatccgcccctggaaagtaaatacgagtgtcctatctgtttgatggctcttcgggaagca
gtgcagacaccatgtggacaccgcttttgcaaaggctgcattgtcaaatcaataagagat
gcaggtcacaaatgtccagtagacaatgaaattctacttgaaaatcaacttttccctgac
aactttgcgaagagggaaatcctctcgctaacagtgagatgtcccaacaaagggtgccgt
ttgaagatggagctgagacatctagaggagcatcagttgcagtgtaacttttcatgtgtg
gaatgcccgcagtgcctgggctccttccagaagaatcagatgaaagagcacatgacacag
gaatgtccacggcggaaagtctgctgtcccaactgtgccacgtctatggcttatgaagat
aaagagcatcatgaagagcactgtccactggcaaatgtgttttgtgaatattgtaatact
gtgctcattagagaacagatgcctaatcattatgataatgactgtcctacagccccagta
ccatgtacttacagtgcctttggatgtcctgaaaagatgcagagaaatgaattggcacgc
cacatgcaggaatttactcaggttcacatgagaatgatggctcagactctcctaagtgtc
agtgtgactgccacagttcctgtatccttctccaatggcccatcctttgagccaggcctc
ttctcccacccttcatcttccccatatgagtgcaacccggaagtagagaacttcaaggag
acaattcagcagttggaaggtcgcttggtaagacaggatcaccaaatcagagagctgatt
gctaaaatggaaactcagagtattaacatggttgagctcaaacgtactatcagaaaccta
gaggggaaaattgctgaaatggaggcacagcaatgtaatggcatttatatctggaagatt
gagaatttctcttcacttctgaaagcccaagaagaagaaaggcctgttgtgacacacagc
cctggcttctacactggaaaacctggctacaaactctgtttgcgtctgcatatccagtta
ccaaattctcagcgttgtgctaactttatatccctttttgtccatactatgcaaggggaa
tatgacagctacctgccttggccattccagggcaccatacggctttctattctggatcag
tctgaaggacctgaaaggctgaatcatgaagaagtaatggaagccaaacctgagctgcta
gccttccagagaccaacagtccaccgcaacccaaagggttttggttacgtgactttcatg
cacctgcaagctctgaaacaaagaacctttgtaaaagatgatacccttcttgtgcgctgt
gaagttgtaacacgattagattttaacagtctccggagggagggatttcagccccgtagt
actgaaggtgtagtgtag
DBGET
integrated database retrieval system
