KEGG   Gorilla gorilla gorilla (western lowland gorilla): 101154151
Entry
101154151         CDS       T02442                                 
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X3
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
ggo  Gorilla gorilla gorilla (western lowland gorilla)
Pathway
ggo03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ggo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    101154151 (KDM2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ggo03000]
    101154151 (KDM2B)
   04121 Ubiquitin system [BR:ggo04121]
    101154151 (KDM2B)
   03036 Chromosome and associated proteins [BR:ggo03036]
    101154151 (KDM2B)
Enzymes [BR:ggo01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     101154151 (KDM2B)
Transcription factors [BR:ggo03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    101154151 (KDM2B)
Ubiquitin system [BR:ggo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     101154151 (KDM2B)
Chromosome and associated proteins [BR:ggo03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    101154151 (KDM2B)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     101154151 (KDM2B)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box Cupin_8 JmjC AppA_SCHIC
Other DBs
NCBI-GeneID: 101154151
NCBI-ProteinID: XP_030856755
Ensembl: ENSGGOG00000014021
LinkDB
Position
10:complement(join(136874252..136874433,136883842..136884060,136884785..136884946,136885039..136885202,136886125..136886804,136886960..136886998,136887648..136887761,136887980..136888240,136888418..136888504,136889243..136889386,136896508..136896732,136938081..136938167,136953079..136953551,136956795..136956921,136967070..136967185,136978947..136979100,136980637..136980730,136995000..136995106,136995584..136995762,137020739..137020785,137021978..137022056,137024998..137025142,137026209..137026241))
AA seq 1305 aa
MEAEKDSGRRLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNAIAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSHLTQEYQRESMLI
DAPRKPSIDGFSSDSWLEMEEEACDQQPQEEEEKDEEGEGRDRAPKPPTDGSTSPTSTPS
EDQEALGKKPKAPALRFLKRTLSNESEESVKSTTLPVDYPKTPTGSPATEVSAKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVVT
WPKKTPKNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSIC
NEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQ
KMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGLLRRKSDDVHLRKKRKYEKPQE
LSGRKRASSLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRS
WKNAEDRMALANKPLRRFKQEPEDELPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKK
KVKMRRKRRLPNKELSRELSKELNHEIQRTENSLANENQQPIKSEPESEGEEPKRPPGIC
ERPHRFSKGLNGTPRELRHQLGPSLRSPPRVISRPPPSVSPPKCIQMERHVIRPPPISPP
PDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCK
SITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSS
CPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLR
LIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKR
CGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq 3918 nt   +upstreamnt  +downstreamnt
atggaggcagagaaagactctggaagaagattgcgcccgattgaccgccagcgatacgac
gagaacgaggacttgtcggacgtggaggagatcgtcagcgtccgcggcttcagcctggag
gagaagcttcgcagccagctgtaccagggggacttcgtgcacgccatggagggcaaagat
ttcaactatgagtacgtacagagagaagctctcagggttcccctgatatttcgagaaaag
gatggactgggaattaagatgcctgaccctgatttcacagtccgagacgtcaaactccta
gtggggagccggcggcttgtggacgtgatggatgtgaacacccagaagggcacggagatg
agcatgtcccagtttgtgcgttactacgagacgcccgaggcccagcgggacaagctgtac
aacgtcatcagcctagagttcagccacaccaagctggagcacttggtcaagcgtccgact
gtggtagacctggtggactgggtggacaacatgtggccccagcatctgaaggagaagcag
acagaagccacgaacgccattgcagagatgaagtacccgaaagtgaagaagtactgtctg
atgagcgtgaaaggttgtttcactgacttccacatcgactttggaggcacttccgtttgg
taccatgttttccggggtgggaagattttttggctgattcctccaacgctgcacaatttg
gcgctgtacgaggagtgggtgctgtcaggcaaacagagtgacatctttctgggagaccgt
gtggaacgatgccaaagaattgagctgaagcagggctacacatttttcatcccttccggt
tggatccatgccgtctacacccctgtagactctttggtgttcggcggaaacatcctgcac
agctttaacgtgcccatgcagctgcggatctacgagatcgaggacaggacgcgggtgcag
cccaaattccgttaccccttctactatgagatgtgctggtatgtcctggagagatacgtg
tactgtgtgacccagcgctcccacctcactcaggaataccagagggagtcgatgcttatt
gatgccccgaggaagcccagcatagacggcttctcttccgattcctggctggagatggag
gaggaggcctgtgatcagcagcctcaggaggaggaggagaaggacgaggagggcgagggc
agggacagggcacccaaaccgcccaccgatggctccacttcacccaccagcacgccctct
gaggaccaggaggcccttgggaagaagcccaaagcacctgccctgcgattcctcaaaagg
actttgtctaacgagtcggaggaaagtgtgaagtccaccacattgcctgtagactacccc
aagacccccaccggctctcccgccacggaggtctctgccaaatggacccatctcaccgag
tttgaactgaagggcctgaaagctctggtggagaaactggaatccctcccggagaacaag
aagtgtgtccccgaaggcatcgaggacccccaggcactcctggagggtgtgaagaacgtc
ctgaaggagcacgcggatgatgaccctagtctggccatcactggggtccctgtggtgact
tggccaaagaagactccaaagaaccgggctgtgggtcggcccaaggggaagctgggcccg
gcctccgcggtgaagttggccgccaaccggacaacggcaggagctcggcggcgccggacg
cgatgccgcaagtgcgaggcctgcctgcggaccgagtgcggagagtgccacttctgcaag
gacatgaagaagttcgggggccccgggcgcatgaagcagagctgcatcatgcggcagtgc
atcgcgccagtgctgccccacaccgccgtgtgccttgtgtgtggcgaggcggggaaggaa
gacacggtggaagaggaggaaggcaagtttaacctcatgctcatggagtgctccatctgc
aatgaaatcatccaccctggatgccttaagattaaggagtcagagggtgtggtcaacgac
gagcttccaaactgctgggagtgtccgaagtgtaaccacgccggcaagaccgggaaacaa
aagcgtggccctggctttaagtacgcctccaacctgcccggctccctgctcaaggagcag
aagatgaaccgggacaacaaggaagggcaggaacctgccaagcggaggagtgagtgtgag
gaggcgccccggcgcaggtcggatgagcacccgaagaaggtgccgccggacggcctcctg
cgcagaaagtctgacgacgtgcacctgaggaagaagcggaaatacgagaagccccaggag
ctgagtggacgcaagcgggcctcatcgcttcaaacgtcccccggttcctcctctcacctc
tcgccgaggccccctctaggcagcagcctcagcccctggtggagatccagtctcacttac
ttccagcagcagctcaaacctggcaaagaagataagcttttcaggaaaaagcggcggtcc
tggaagaacgccgaggaccgcatggcgctggccaacaagcccctccggcgcttcaagcag
gaacccgaggacgaactgcccgaggcgccccccaagaccagggagagcgaccactcccgc
tccagctcccccaccgcgggacccagcaccgaaggggccgagggcccggaggagaagaag
aaggtgaagatgcgccggaagcggcggcttcccaacaaggagctgagcagggagctgagc
aaggagctcaaccacgagatccagaggacggagaacagcctggccaacgagaaccagcag
cccatcaagtcggagcctgagagcgagggcgaggagcccaagcggcccccgggcatctgc
gagcgtccccaccgcttcagcaaggggctcaacggcaccccccgggagctgcggcaccag
ctggggcccagcctgcgcagcccgccccgtgtcatctcccggcccccaccctccgtgtcc
ccgcccaagtgtatccagatggagcgccatgtgatccggccaccccccatcagccccccg
cctgactcgctacccctggacgatggggcagcccacgtcatgcacagggaggtgtggatg
gccgtcttcagctacctcagccaccaagacctgtgtgtgtgcatgcgggtctgcaggacc
tggaaccgctggtgctgcgataagcggttgtggacccgcattgacctgaaccactgcaag
tctatcacacccctgatgctgagtggcatcatccggcgacagcccgtctccctcgacctc
agctggaccaatatctccaagaagcagctgagctggctcatcaaccggctgcctgggctc
cgggacttggtgctgtcaggctgctcatggatcgcggtctcggccctttgcagctccagt
tgtccgctgctccggaccctggatgtccagtgggtggagggactaaaggatgcccagatg
cgggatctcctgtccccgcccacggacaacaggccaggtcaaatggacaatcggagcaag
ctccggaacatcgtggagctgcgcctggcaggcctggacatcacagatgcctccctgcgg
ctcatcatccgccacatgcccctgctctccaagctccacctcagttactgtaaccacgtc
accgaccagtccatcaacctgctcaccgctgttggcaccaccacccgagactccttaacc
gagatcaacctgtctgactgcaataaggtcactgatcagtgcctgtccttcttcaaacgc
tgtggaaacatctgtcatattgacctgaggtactgcaagcaagtcaccaaggaaggctgt
gagcagttcatagccgagatgtctgtgagtgtccagtttgggcaagtagaagaaaaactc
ctgcaaaaactgagttag

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