Gemmatimonas groenlandica: HKW67_10990
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Entry
HKW67_10990 CDS
T07783
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ggr
Gemmatimonas groenlandica
Pathway
ggr03030
DNA replication
ggr03410
Base excision repair
ggr03420
Nucleotide excision repair
ggr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ggr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HKW67_10990 (ligA)
03410 Base excision repair
HKW67_10990 (ligA)
03420 Nucleotide excision repair
HKW67_10990 (ligA)
03430 Mismatch repair
HKW67_10990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ggr03032
]
HKW67_10990 (ligA)
03400 DNA repair and recombination proteins [BR:
ggr03400
]
HKW67_10990 (ligA)
Enzymes [BR:
ggr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HKW67_10990 (ligA)
DNA replication proteins [BR:
ggr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HKW67_10990 (ligA)
DNA repair and recombination proteins [BR:
ggr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HKW67_10990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HKW67_10990 (ligA)
MMR (mismatch excision repair)
DNA ligase
HKW67_10990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HKW67_10990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
QJR35993
UniProt:
A0A6M4IMS5
LinkDB
All DBs
Position
2592036..2594060
Genome browser
AA seq
674 aa
AA seq
DB search
MSVVPLPIDQRAAELREQLANAQHEYYVLDRPALSDAEYDRLFRELQAIEQAHPTLRTED
SPTLRVGAPVQSAFQTHRHLVRMLSLDNAFDDAELLAFEQSIERVVGASVHKSGYTVELK
IDGAAIALTYRDGVLVTGTTRGDGTEGEDVTVNIRTIRGVPLRLLGDGHPPLMEIRGEVY
MPFAGFEAMNEARVAAGEPVFVNPRNAAAGALRQLDPSITAQRPLRFFGYAAVLPDGNAP
VRSQWDLLEQLTAWGIPVAPHRERCHTMADVSVWAHTVEHQTRAQLGFAIDGGVVKVNDM
SLQDELGVRNDRTPRWAIARKFAPDMAVTKLIRIDVSVGRTGVLTPFAVLEPVDVGGATV
TYASLHNADQIAKKDLRDGDRVQVVRAGDVIPYVLGPVPEKRDGSEQPWTMPPRCPRCDS
PTHRYGDDVATYCPNVACPGRQLEGLVHFSSKDALDIDGLSYARIQQFLQAGFITDFADL
FDLSVAQLVSLERFGTKSAENLVASIAAAKQQPLSRLLFGLGIRHVGAQAAQLLAKQFGS
MDAIIASTPEQLGAVRGIGDIIAASVRSYFDDPTSRALVERLRERSVRFDEPNAVQADGP
LTGATVVLTGSLPSLSRTDAAALVEAAGGRVTSGVSKKTTFVVAGEEAGSKLEKAVELGI
EVIDEAELIRRTGR
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgttccacttcccatcgatcagcgcgcggcggaattgcgcgaacagctggcc
aacgcgcagcacgagtattacgtgctcgaccgtcccgccctgtcggatgccgagtacgac
cggctattccgcgagttgcaggccatcgagcaggcacaccccacactgcgtacagaagat
tctcccacgctgcgtgtgggtgcaccagtgcaaagcgcgttccagacccatcggcacctc
gtgcggatgctgtcgctggacaacgcgttcgacgatgccgagttgctggccttcgagcag
tctatcgagcgtgtggtgggtgcgtcggtgcacaagagcgggtacaccgtcgagctcaag
atcgacggggcggcgatcgcgctcacgtatcgagacggcgtcttggtgacaggcaccacg
cgtggcgacgggacggaaggcgaagacgtgacggtcaacatccgcacgatccgcggcgtg
ccgctgaggctgctgggcgacggtcatccgccgctgatggaaatacgcggcgaggtctat
atgccgttcgccggctttgaggcaatgaacgaggcacgcgtagccgccggcgaaccggtg
ttcgtaaacccgcgcaatgcggcagccggtgccctgcgccagctggatccgtcgattacg
gcgcagcgtccgttgcgattctttggttacgccgccgtgcttcccgacggcaatgcgccc
gtgcgctcgcagtgggatctgctcgaacaactgaccgcgtggggcattccggtggcgccg
catcgcgagcgctgccacacgatggccgacgtgtcggtgtgggcgcataccgtcgagcat
caaacgcgggcacaactcggcttcgcgatcgacggcggggtcgtcaaggtgaacgacatg
tcgctgcaggacgaacttggcgtgcgcaacgatcgcacgccgcgctgggcgatcgcccgc
aagttcgcgcccgacatggcggtcacgaagctgatccgcatcgacgtgagcgttggccga
acgggcgtccttacgcccttcgccgtgctggagccggtggatgtgggcggcgcgacggtc
acgtatgcctcgctgcacaacgccgaccagattgcgaagaaggatctgcgcgacggggat
cgggtgcaggtggtacgcgccggtgacgtcattccgtacgtgcttggtccggtgcccgag
aaacgtgatgggagcgagcagccgtggaccatgccaccgcgatgcccgcgctgcgattcg
cccacgcatcggtacggcgatgatgtcgcgacgtattgtccgaatgtcgcctgccccggt
cgccagctcgaaggcctcgtgcatttctcgagcaaagacgcgctcgatatcgacgggctc
tcgtacgcgcgcattcagcagttcctccaagcgggcttcatcaccgacttcgccgatctg
ttcgacctttcagtcgcgcagctcgtgtcactcgagcgtttcggtaccaagagcgccgag
aatctggtggcgtcgatcgccgccgcgaagcagcagccgctgtcgcgattgctcttcggg
ctcggcatccgtcatgtgggcgcgcaggccgcgcagttgctggccaagcagttcggcagc
atggacgccatcatcgcttccacgcccgaacaactgggcgcggtgcgcggcatcggcgac
atcatcgcggcgtcggtgcggtcgtatttcgacgatcccacctcgcgcgcgttggtggag
cggttgcgcgagcgcagtgtgcgcttcgacgagccgaacgcggtgcaggccgacggcccg
ctgaccggggccaccgtggtcctcaccggctccctgccgtcgctttccaggaccgacgcg
gcggccttggtggaagcggccggagggcgggtgacgagcggcgtatcgaaaaagaccaca
ttcgtcgtggccggcgaggaagcggggagtaagctcgagaaggccgtcgagctgggcatc
gaagtgatcgacgaagccgagctgatccgtcgtaccgggcgatga
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