Gossypium hirsutum (upland cotton): 107887153
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Entry
107887153 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107887153
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
107887153
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-RING_2
ResIII
zf-C2HC_2
Prok-RING_4
zf-C3HC4_4
TPR_NUP160_120_M
zf-rbx1
zf-C2H2
zf-Di19
Motif
Other DBs
NCBI-GeneID:
107887153
NCBI-ProteinID:
XP_016666796
UniProt:
A0A1U8HL70
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Position
A03:complement(56656824..56664901)
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AA seq
885 aa
AA seq
DB search
MQLRSRKRTSNFSTNEEHSDSSDQADNFIQLDDLSDSETYVRSSDSDLGEEEILDLNHKA
VKAAPITISDFTEPPTNRGNGEQILSEQNESQFDFYVSTAKKRNNTKRKKKARSGQPLMW
EVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSN
TEGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPV
VAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPP
KEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERKKPKSMFKSGKKHASNYEADS
RKRASKKKAKHNKEDKDRDFEFDETSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRR
CNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSS
TQCPNCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAA
DLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQ
AVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDF
SASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKXEAL
REEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFT
EDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQCKPIRIVRF
VIENTIEERILKLQEKKELVFEGTVGGSTEALGKLTEADMRFLFV
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttcgatcgcgtaaaaggacctccaacttctctaccaatgaagaacacagcgat
agttctgaccaagccgataattttatccagttggatgatctctccgattcagaaacctat
gtccgttcctccgattctgatctaggggaagaggagattctggacttaaaccataaagca
gtgaaagctgctcctatcaccatttctgattttaccgagcctccaacaaacagaggcaat
ggtgaacagatactatctgagcaaaatgaaagccagtttgacttttatgtgtcaaccgcg
aagaagagaaacaatacaaaaaggaaaaagaaggctaggtctgggcaaccgttaatgtgg
gaagtttgggaacaagagcatgagaaatggattgatgagaatttgacggtagatgttgat
cttgatcaacagaatgcggtaataactgagacttctgacgcatcatccgacttaattatt
cctttgttgaggtaccaaaaggaatggttggcctgggctctgaaacaggaagactcaaat
accgaagggggaatccttgcagatgagatgggaatggggaagaccattcaagcgatagcc
cttgtccttgccaaacgtcaagtactccatacaattggtgaacccaatgtttcgtcacag
actgcaggttcatcaacagatttgcccaggataagatgcacccttgttatttgtccggtt
gttgcggtgagtcagtgggtaagtgagattgatcggtttacttcaaggggaagcaccaag
gtgttggtttaccatggtgccaatagagggaaaaatgtgaaacagttctcagaatatgat
tttgtaataacaacatattcgattgttgaggctgaatataggaaattcatgatgccacca
aaggagaaatgcccttactgtgggaagtcatttcaccaaaagaagctctctgttcacttg
aaatattattgtgggcctgatgctattaaaacagaaaaccaatctaagcaagaaagaaag
aaaccaaaatctatgttcaagtcaggcaaaaaacatgctagtaattatgaagctgattcc
agaaagagggctagcaagaagaaagcaaagcataataaggaagacaaagacagagacttt
gagtttgatgaaacttctgcaggcaaagaacataacttgcctgagggaaaatcacttcta
cactctgtgaagtgggagcgcatcatcttggatgaggctcattttgtgaaagatagacgt
tgtaatactgcaaaggctgtcctttctttggaatccttatacaaatgggctttgagtggc
actccactgcagaatcgtgttggagaactgtactctttggttcgcttcttgcaaatagtt
ccatactcctattacttgtgcaaagattgtgactgcaaaactcttgattatagttcatca
acacaatgcccaaactgcccccataattctgtgaggcatttttgttggtggaataagtat
gtggctacgccaatacaacattatggaaatggtgagatcgggaaaagagctatgatattg
ctaaaacacaaaattttgaagaacattgtcctaaggcgtaccaagaaaggcagggctgct
gatcttgctcttcctcctagaattatttccttgagacgggacaccatggacattaaagaa
accgactattatgaatctttgtacagtgaaagtcaggcacaatttaacacatatgttcaa
gcaggaactgtaatgaacaattatgctcacatttttgacctcctcacacgcttgcggcag
gctgttgatcacccttaccttgtagtatattcgagtactgctgcacaaagagctggaaac
atagtcaatggtgataggaatgatgatgaacaagtttgtggcatttgcaatgatcctgca
gaagatccagtggttactgcatgtgcacatgtcttctgcaaagcttgtctgattgatttt
tctgcctccctgggaaatgtctcatgcccctcatgctcaagattacttactgttgatctg
actacgaatgcagatggagggcaatctagcaaaacaacactgaaggggtttaaatcctca
agtattctgaacagaattcaattaaatgattttcagacgagcactaaantagaggctttg
agggaagaaatcagattcatggtggaaagagatggttctgcgaagggaattgttttcagc
caattcacatctttcttggatctcataaaatactcccttcataagtccagcataaaatgt
gttcaactagtagggagcatgtccttggctgcgagagatgctgcaattaagagttttact
gaggatccagattgcaagatatttctcatgagtttgaaagctggaggtgttgcccttaat
ctcacagttgcatcacatgttttcttgatggacccttggtggaacccagctgtggagcgc
caagcacaagataggatacaccgaatagggcaatgtaaaccaataaggattgtgaggttt
gttattgagaacacaatagaggagaggatattaaagctgcaagaaaagaaggaattagtg
tttgaagggacggtgggtggctccacagaggctctaggaaaattgacggaggcagacatg
agatttctatttgtgtga
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