Gossypium hirsutum (upland cotton): 107889174
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Entry
107889174 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107889174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107889174
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107889174
Complex C
U5 SnRNP specific factors
107889174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Septin
EF-G_D2
Ras
Motif
Other DBs
NCBI-GeneID:
107889174
NCBI-ProteinID:
XP_016669021
UniProt:
A0A1U8HSR1
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All DBs
Position
A09:complement(65666574..65672055)
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AA seq
990 aa
AA seq
DB search
MDDNLYDEFGNYIGPEIESDQGSEGEEEENEDLLDRHAQEEREESDGEAPPGASNGWITA
ANDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVK
DSSTYVSTQFLIGLMSNPGLVRNVALVGHLQHGKTVFMDMLVEQTHHMKTFDENSEKHMR
YTDTRIDEQERRISIKAIPMSLVLEDSNAKSYLCNIMDTPGHVNFSDEMTAALRLADGAV
LIVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLXPKDAYHKLRHTLEVIN
NHISAASTTAGNVPVIDPAAGNVCFADASAGWSFTLQSFAKLYVKLHGIPFDAEKFASRL
WGDIYYHPDTRAFKRKPPAGGGERSFVEFVLEPLYKIYSQVIGEHRKSVESTLAELGVTL
SNAAYKLNVRPLLRLACSTVFGSASGFTDMLVQHIPSPKDVAAKKVDHIYTGPKHSIIYK
AMVDCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQTLRVLGEGYSPDDEEDMT
VKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNVDLDEDVYILRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENS
AVSVDWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLGSVR
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASESLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKTIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacttgtatgatgaatttgggaactatattggacctgagattgagtccgac
caggggagtgaaggtgaggaagaagaaaatgaagatctcctcgacaggcatgctcaagag
gaaagagaagaatctgatggtgaggctccacctggtgcgtctaatggatggattactgca
gctaatgacgtcgatatggacaatcagattgttcttgctgaggacaagaaatattacccc
acggctgaagaggtttatggtgaggatgttgagacattggttatggatgaagatgagcag
cctcttgaacaacctattattaagcctgttaagaatatcaagtttgaggttggagttaag
gattcttcaacttatgtatcgacccagtttcttatcggtttgatgtcaaatccaggtttg
gttcggaatgttgcccttgttgggcacttgcagcatggaaagacggtgtttatggacatg
ttggttgagcaaacccaccatatgaaaacatttgatgaaaatagtgagaagcacatgaga
tacactgatacaagaattgatgagcaagagagaaggatatctatcaaggcaattccaatg
tcacttgttcttgaggacagtaatgcaaaatcctatctttgtaacatcatggacactcct
ggtcatgtgaacttttctgatgaaatgaccgctgctcttaggcttgctgacggtgctgtg
ttgattgttgatgctgctgaaggagtgatggtaaacactgagagggctatacgccatgca
atacaggagcgcctacctattgtagttgttataaacaaggttgaccggctgataacagaa
cttaagttgnccccaaaagatgcttatcataaattaaggcatacactggaagtaatcaat
aaccacatatctgccgcctctacaactgctggtaatgttcctgttattgatcctgctgct
ggaaatgtttgttttgctgatgcaagtgcgggatggtccttcactttgcagtcatttgca
aaattatatgtcaaacttcatggaattccttttgatgctgagaagtttgcatctcgtctt
tggggagatatttattatcatcctgatacaagggcttttaaaagaaaacctcctgctggt
ggaggagaacgatcatttgttgaattcgtgcttgaacccctttataagatatatagccag
gtgattggtgaacataggaagagtgtagaatcgactcttgcagagttgggtgtcactctt
agcaatgctgcttacaagttaaatgttaggcctttgctaaggctggcttgcagtacagtt
tttggttcagcttcaggcttcactgatatgctggttcagcacataccatctcctaaggat
gtcgcagctaagaaggttgatcacatatacactggacctaaacattctattatttacaag
gcaatggtagattgtgatccttctggccctcttatggttaatgtgaccaaactatacccc
aagtccgattgtagtgtttttgatgcttttggtagagtttacagtggtagaattcaaaca
ggacaaacattgagagtactcggagaaggctattcaccagatgacgaggaggacatgaca
gtgaaagaagtaaccaaattatggatataccaagctcggtatagaatacccattagcagt
gcccctcctggttcttgggttctcattgaaggtgttgatgcttcaattatgaaaactgcc
acgctttgtaatgtggatcttgacgaagatgtatacatattgcggcctttacagtttaat
actcttcctgttgtaaaaacagcaactgagcctttaaatcccagtgagttgcccaaaatg
gtggaggggcttcggaagattagcaaaagctatcctctagctattactaaagttgaggaa
tctggtgagcacaccatattaggtactggagaattgtacttggactcaatcatgaaagac
cttagggagctgtattctgaggtggaagttaaggtggcggatcctgttgtttcattctgt
gaaacagtggtggagtcttcttccatgaaatgctttgctgaaacacccaacaagaagaat
aaaataaccatgattgcagagccattggaaagagggcttgcagaagacattgagaacagt
gctgtaagtgttgattggagtcggaagcaacttggcgacttcttcaagacaaaatatgac
tgggatttgcttgctgcacgttccatctgggcatttggccctgataagcagggacctaat
attttattggatgatacactcccaactgaggttgacaagtctttgttgggttccgtcagg
gattctattgtccaagggtttcagtggggtgcaagagaaggacccctctgtgatgaacca
ataagaaatgtaaagttcaaaatagtggacgcaaggattgcgtctgaatcattgcaccgg
ggatctggacagatcatccccacagctcgacgtgtggcctattcagctttccttatggca
accccacggcttatggaacctgtatattatgtggagatacaaacaccaatcgactgtgtc
tctgctatctatactgttttgtcccgtagacgtggtcatgttacagctgatgtgccgcag
ccaggaacccctgcttatattgtcaaggcatttttacctgtgatagagtcgtttggattc
gagactgatctaaggtaccacacgcaagggcaagccttttgtctctcagtattcgaccac
tgggccatagttcctggagatcccttagacaagaccatagttttgcggcctcttgaacct
gcaccaatacagcaccttgctcgggagttcatggtgaagacgaggcgtagaaagggaatg
agtgaagatgtgagcatcaacaagttctttgacgaggctatggtggtggagttggctcag
caggcagctgatcttcatcagcagatgatataa
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