Gossypium hirsutum (upland cotton): 107891521
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Entry
107891521 CDS
T04793
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107891521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107891521
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107891521
Complex C
U5 SnRNP specific factors
107891521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Septin
EF-G_D2
Ras
Motif
Other DBs
NCBI-GeneID:
107891521
NCBI-ProteinID:
XP_016671845
UniProt:
A0A1U8I0S9
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All DBs
Position
D09:complement(38095118..38100757)
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AA seq
990 aa
AA seq
DB search
MDDNLYDEFGNYIGPEIESGQESEGEEEEDEDLLDRHAQEEREESDGEAPPGASNGWITA
ANDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVK
DSSTYVSTQFLIGLMSNPGLVRNVALVGHLQHGKTVFMDMLVEQTHHMKTFDENSEKHMR
YTDTRIDEQERRISIKAIPMSLVLEDSNAKSYLCNIMDTPGHVNFSDEMTAALRLADGAV
LIVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVIN
NHISAASTTAGNVPVIDPAAGNVCFADASAGWSFTLQSFAKLYVKLHGIPFDAEKFASRL
WGDIYYHPDTRAFKRKPPAGGGERSFVEFVLEPLYKIYSQVIGEHRKSVESTLAELGVTL
SNAAYKLNVRPLLRLACSTVFGSASGFTDMLVQHIPSPKDVAAKKVDHVYTGPKHSIIYK
AMVDCDASGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQTLRVLGEGYSPDDEEDMT
VKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNVDLDEDVYILRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENS
AVSIGWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLLGSVR
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASESLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKTIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacttgtatgatgaatttgggaactatattggacctgagattgagtccggc
caggagagtgaaggtgaggaagaagaagatgaagatctcctcgacaggcatgcccaagag
gaaagagaagaatctgatggtgaggctccacctggtgcgtctaatggatggattactgca
gctaatgacgtcgatatggacaatcagattgttcttgctgaggacaagaaatattacccc
acggctgaagaggtttatggtgaggatgttgagacattggttatggatgaagatgagcag
cctcttgaacaacctattattaagcctgttaagaatatcaagtttgaggttggagttaag
gattcttcaacttatgtgtcgacccagtttcttatcggtttgatgtcaaatccaggtttg
gttcggaatgttgcccttgttgggcacttgcagcatgggaagacagtgtttatggacatg
ttggttgagcaaacccaccatatgaaaacatttgatgaaaatagtgagaagcacatgaga
tacactgatacaagaattgatgagcaagagagaaggatatctatcaaggcaattccaatg
tcacttgttcttgaggacagtaatgcaaaatcctatctttgtaacatcatggacactcct
ggtcatgtgaacttttctgatgaaatgaccgctgctcttaggcttgctgacggtgctgtg
ttgattgttgatgctgctgaaggagtgatggtaaacactgagagggctatacgccatgca
atacaggagcgcctacctattgtagttgttataaacaaggttgaccggctgataacagaa
cttaagttgcccccaaaagatgcttaccataaattaaggcatacactggaagtaatcaat
aaccacatatctgccgcctctacaactgctggtaatgttcctgttattgatcctgctgct
ggaaatgtttgttttgctgatgcaagtgcgggatggtccttcacattgcagtcatttgca
aaattatatgtcaaacttcatggaattccttttgatgctgagaagtttgcatctcgtctt
tggggagatatttattatcatcctgatacaagggcttttaaaagaaaacctcctgctggt
ggaggagaacgatcatttgtcgaattcgtgcttgaacccctttataagatatatagccag
gtgattggtgaacataggaagagtgtagaatcaactcttgcagagttgggtgtcactctt
agcaatgctgcttacaagttaaatgttaggcctttgctaaggctggcttgcagtacagtt
tttggttcagcttcaggcttcactgatatgctggttcagcacataccatctcctaaggat
gttgcagctaagaaggttgatcacgtatacactggacctaaacattctattatttacaag
gcaatggtagattgtgatgcttctggccctcttatggttaatgtgaccaaactatacccc
aagtccgattgtagtgtttttgatgcttttggtagagtttacagtggtagaattcaaaca
ggacaaacattaagagtactcggagaaggctattcaccagatgacgaggaggacatgaca
gtgaaagaagtaaccaaattatggatctaccaagctcggtatagaatacccattagcagt
gcccctcctggttcttgggttctcattgaaggtgttgatgcttcaattatgaaaactgcc
accctttgtaatgtggatcttgacgaagatgtatacatattgcggcctttacagtttaat
actcttcctgttgtaaaaacagcaactgagcctttaaatcccagtgagttgcccaaaatg
gtggaggggcttcggaagattagcaaaagctatcctctagctattactaaagttgaggaa
tctggtgagcacaccatattagggactggagaattgtacttggactcaatcatgaaagac
cttagggagctgtattctgaggtggaagttaaggtggcggatcctgttgtttcattctgt
gaaacagtggtggagtcttcttccatgaaatgctttgctgaaacacccaacaagaagaat
aaaataactatgattgcagagccattggaaagagggcttgcagaagacattgagaacagt
gctgtaagtattggttggagtcggaagcaacttggcgacttcttcaagacaaaatatgac
tgggatttgcttgctgcacgttccatctgggcatttggccctgataagcagggacctaat
attttattggatgatacactcccaactgaggttgacaagtctttgttgggttccgtcagg
gattctattgtccaagggtttcagtggggtgcaagagaaggacccctctgtgatgaacca
ataagaaatgttaagttcaaaatagtggacgcaaggattgcatctgaatcattgcaccgg
ggatctggacagatcatccccacagctcgacgtgtggcctattcagctttccttatggca
accccacggcttatggaacctgtatattatgtggagatacaaacaccaatcgactgtgtc
tctgctatctatactgttttgtcccgtagacgtggccatgttacagctgatgtgccgcag
ccaggaacccctgcttatattgtcaaggcatttttacctgtgatagagtcatttggattc
gagactgatctaaggtaccacacgcaagggcaagccttttgtctctcagtattcgaccac
tgggccatagttcctggagatcccttagacaagaccatagttttgcggcctcttgaacct
gcaccaatacagcaccttgctcgggagttcatggtgaagacgaggcgtagaaagggaatg
agtgaagatgtgagcatcaacaagttctttgacgaggctatggtggtggagttggctcag
caggcagctgatcttcatcagcagatgatataa
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