Gossypium hirsutum (upland cotton): 107892125
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Entry
107892125 CDS
T04793
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107892125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107892125
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107892125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_5th
Ig_NUP210_3rd
Ig_NUP210_2nd
Ig_NUP210_15th
Ig_NUP210_16th
Ig_NUP210_9th
Invasin_D4
NR_Repeat
Motif
Other DBs
NCBI-GeneID:
107892125
NCBI-ProteinID:
XP_016672611
UniProt:
A0A1U8I2Z3
LinkDB
All DBs
Position
A09:10318308..10335134
Genome browser
AA seq
1953 aa
AA seq
DB search
MSKMIRFIFWLFSTVSLMAVIGTASHSSSGPHIADVNILLPPKMTNPVEYRLQGSDGCFK
WSWDHHEILSVLPEYNVTNHCSTSARLRSIAPYSGRKETAVYARDVHTGIVIRCKVFIDN
FDRIQIFHNSIKLDLDGLATLRVRAFDTEDNVFSSLVGLQFMWKLMPKTSGLSHHLAHVP
LKDSPLSDCGGLCGDLDVQIKLEEKGVFSDLFVVKGIHIGHENVSVQLLEPPLKGMGDKI
VLTVAEAMSLYPPSPVFVLIKATLHYSLKVIRENVPQEVSLPSPHHRWSVSNSSVAEMDS
TMGVIHALTLGETTVIVEDTRVDGHSQMSSLKVVLPDTLSMYISLLSASGDPIEGMEPIP
PMARWYVVSGKQYVIQLKVFSRGPYAQEIYITENDDIEFYDNQSGYWKIVPVLEPIASRY
GWRSARILEATSEGLGKLTTSLVYYNGHHDSKEVLKVMQEVIVCDQVKFSLGKVTGESQT
ILLPWAPAVHQEMELKAAGGCAKASSDYKWFSSDITVISVTAYGAVQAKKPGKATVKVVS
SFDSFNYDEVMIEVSIPSSMVMLQNFPVETVVGSHLPAAVSMKASNDAYFSRCDAFHSFI
KWKAGSESFIVTNATGEAPVLQKEDNLELHVPVDGPPCSWTYIYASASGQAMLHATFSKE
YHHIDPSLSGPIVLGATSRIASYMPLTLHQAGDGNQFGGYWVNTARIETTNKLEDRDKVY
LVPGTQVDVILHGGPERWDKGVEFVQRVEIFDEEHTHDNGVDVHLISSSDGSLYRLLCQT
LGTYRLVFKRGNLVGDDHSLPALVEASLSLACSLPSSIVVIVDEPVNNRDVIRTAIQADR
SPGQSQVTPVTVANGRTIRVAAVSISTTGEPFANSSSLCLKWELGSCDSLAYWNHAYDSE
NYNPSSWERFLVLRNESGSCIVRATITGFFGSSAADRYSAKLLEGSDNFLTDAVRLQLVS
TLKVSPEFNLLYFNPNAKANLSITGGSCFLEAVVNDSRVVEVTQSPPGLQCLQLILSPKG
LGTAVVTVYDIGLTPNLVASVVVQVADIDWIEIMSGEEISLMEGSSKSIGLMAGVDDGST
FDIPQYAYMNIRVHIEDDIVELADKDDFSSPSGRYIGAQTFKIRAKHLGVTTLYVSARRH
SGHELLSQAIKVEVYAPPTIHPPNIFLVPGASYLLTIKGGPTLGAFVEYTTTDDAIATVD
KTLGRLTATSPGNTTLLATVYGNGGDVICQADSSVKVGVPSSAILNVQSEQLAVGRETPI
YPLFSEGDLFSFYGLCKDYKWNIEDEEVLTFGVPLVGSETVQHVSYVDNKELSFINVLYG
RAPGRTNIAVSFSCDFISSGSHMEARTYNASLSLLVVSDLPLALGAPVTWLLPPHYTTSS
ILPSSVESHGQKDGQNRKGSIIYSLLRNCKEATEASQRAVSIDGDKIKTEESNNLACIQA
KDRITGRTEIASCVRVAEVEQIRITNKELPVHSIDLAVGAEIELSISYHDAIGNPFYEAS
NVILHHAETNYPDVVSVNNTRGTNMIHLKAMRHGRALLRVSIDNRPQKSDYMLISVGAYV
HPQNPVLHQGSSINFSVVGSDDQASGHWHSVNESVIVLHTQSGQAEAVGEGSTQVSFESS
NVKLRTTVTVLPGSTLVVDAPKEMLTNVPFPSQGFSFSVKFSDTNDKINTVGSSKGAPYD
CRVDPPFVGYAKPWIDLDTGNSFCLFFPYSPEHLVRTIPKLKDMKPYIYVSINASMKEHS
HVSGSASALFVGGFSVMQMGKDIAQLNLTPDFNKTIITILGNTDVEIHWHGQDLLAINPI
QKEGFGLSRRIDYEVKALSAKRFADKIIVKLPSTGQRVEVDVNYEPDEKSEATINFSFWA
KVMGSIALTVITLIIGFICFLDRPLGSSQPPSTPLCSSSISAPVTPDRRSPLRLDEQSPR
TPQPFVDYVRRTIDETPYYRREGRRRFNPQNTY
NT seq
5862 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatgattcgcttcatattttggcttttttccactgtttcgttaatggcggtg
attggaacggcgtcgcattcgagctctggtcctcacatagctgacgtcaacatactttta
cctccgaaaatgacgaaccccgtcgaatatcggcttcaaggaagcgacggttgtttcaaa
tggtcgtgggatcatcatgagattttatcagttctgccggagtataacgtgaccaatcat
tgctcgacaagtgcacggctgagatcgattgcgccttactccggtagaaaagaaactgcg
gtttacgctagggacgtgcacactggaatcgtgattcggtgcaaggttttcattgataat
tttgatagaattcaaatatttcataattctattaagcttgatcttgatggactcgctact
ctccgagttcgtgcctttgatactgaagacaatgtgttttcgtcattggtgggtttacaa
ttcatgtggaagctgatgccaaaaactagtgggttgagtcatcaccttgcccatgttcct
ttgaaggattctcccttaagtgactgtggtggactgtgtggtgacttagatgtccagata
aaacttgaagaaaagggtgtattttcagatttatttgttgtaaaaggcattcatattggc
catgagaatgtttcagtacaattgcttgagccaccgttaaagggcatgggtgataagatt
gttctaactgttgcagaagctatgtcactatatccaccgtcacctgttttcgtcctcatt
aaggctactctccattatagtcttaaggttatccgtgagaatgttcctcaagaggtatct
cttccatcgccacatcatcgatggtctgtctcaaacagttcagttgctgaaatggactct
acgatgggtgtcattcatgcgctaacattgggtgaaacaactgtcattgttgaagatact
agagttgatggccatagtcagatgtcatctcttaaggtggtcttgccagataccttgtct
atgtacatatcactattatctgcttctggtgatccaatagaaggaatggaacccattccc
cctatggcacgttggtatgttgtttctggaaaacaatacgtcattcaacttaaggttttt
tctcggggaccatatgcacaggaaatctacattactgagaatgatgatattgagttttat
gacaaccaatctggctattggaaaattgtccctgtgttagagcctattgcatctagatac
ggctggaggagtgctagaattttggaagctacttcagagggactggggaaactaacaacc
tctttagtttactataatggacatcatgatagtaaggaggttctcaaggttatgcaagag
gttattgtatgtgatcaagtaaagtttagcttgggaaaagtaactggtgaatctcaaact
attctccttccttgggcacctgcagtacatcaggagatggagttaaaggctgctggaggt
tgtgcaaaagcctcaagtgactataaatggttttcttcagacattactgttatttcggtc
actgcatatggagctgtccaggcgaaaaagcctggtaaagctacagtgaaggtggtgtca
agttttgattcattcaattacgacgaggttatgattgaagtttcaattccatcctctatg
gttatgttacaaaacttccctgttgagactgttgtgggatcacatctcccagctgctgtt
tcaatgaaagcatcaaacgatgcctacttttctagatgtgatgcatttcattcctttata
aagtggaaagctggaagcgagtctttcattgttaccaatgctacaggagaggcaccagtc
cttcaaaaggaagataatttggaactccatgtaccagtagatggtcctccatgttcatgg
acttacatatatgcttctgcatctggtcaagctatgctgcatgcaacattttcaaaggaa
tatcatcatattgatccctctttaagtgggcctattgttttaggggcaacttccagaatt
gcatcatacatgcctcttactctgcaccaggcaggtgacgggaaccagtttggtggttac
tgggttaatacagctcgaatagaaactactaataaactagaagatcgagataaggtatat
cttgtccctggaacacaagtagatgtcattcttcatggagggccagaaaggtgggacaaa
ggtgttgagtttgtgcagagagtggagatttttgatgaagaacatacacatgacaatggg
gttgatgttcatctgatttctagcagcgatggtagtttgtacagacttttatgccaaaca
ctggggacctatagacttgtttttaaacgtggaaatttggttggagatgatcattctctt
cccgcattagtggaagcttccttgtctcttgcttgcagccttccttcctcaattgtggta
atagtggatgaacctgttaataatcgagatgttattcggactgcaattcaagctgaccgt
agcccggggcaaagtcaagtcaccccagttactgtggctaatgggcgaactattagagtg
gctgctgtaagtattagtaccactggggagccttttgcaaactcttcttccctgtgctta
aagtgggagttaggcagttgtgacagtctggcttattggaaccatgcttatgattcagag
aactataatccatctagttgggagaggttcctggtcttgcgaaatgaatcgggatcgtgt
attgttcgtgccaccattactggattctttggtagttccgcagctgaccgttattctgct
aaattgctagaaggttcagataattttcttacagatgctgtaaggttacagcttgtttct
actctaaaagtgagtccggagttcaatctgttatatttcaaccctaatgctaaggcaaat
ttgtcaattactggagggagctgtttcttggaagctgttgtgaatgattctcgagtcgtt
gaagttactcagtcaccacctggtttacaatgcttacaactgattttatcaccgaaaggc
cttggaactgcagttgtgacagtttatgatattgggcttactcctaatcttgtggcttct
gtcgtggtccaagttgcagatatagactggattgagattatgtctggagaagagataagc
cttatggaaggaagttcaaagtcaattggtttgatggctggggttgatgatggaagcact
tttgacattcctcagtatgcgtacatgaatatccgtgtgcatattgaagatgatatagtg
gaacttgcggacaaggatgatttctcaagccctagcggtcgatatataggtgcacagact
ttcaaaatcagggcaaaacatcttggtgtcacaactctttacgtcagtgctagacgacat
tctggacatgaactattgagtcaagctataaaggttgaggtttatgctccaccaacaatt
cacccaccaaatattttcctagtaccaggcgcttcttacttgctcactattaaaggaggt
ccaacccttggtgcctttgtggaatatacaactacagatgatgccattgcaacagtggac
aaaactttagggcgattgactgcaacttcacctggaaacactacactgcttgccacagtt
tatgggaatggcggtgatgtgatttgtcaagcagatagcagtgttaaagtgggagtaccg
tcttcagcgatattgaatgtacaaagtgaacaacttgctgttggccgtgagacaccaatt
tatcctttattttctgagggagacttattttctttctatgggctatgcaaagactacaag
tggaacatagaagatgaagaggtgttaacatttggggttccactggttggttcggaaaca
gttcaacacgttagttatgtggataacaaagaacttagttttatcaatgttctgtatgga
agggccccagggaggacaaatattgcagtttcattctcatgtgactttatttcttctggt
tcacacatggaggcaaggacttacaatgcttctctctcactattggtagtgtctgatctt
cccctggcacttggagctcctgtcacatggcttcttcctccccattataccacatctagc
atcttaccttcatcagtagagtcacatgggcaaaaagatggtcagaatcgcaaaggaagc
ataatctattctttgttaagaaattgtaaggaagcaacagaagcttcacagcgtgctgtt
tctattgatggggacaaaataaaaacagaagagagcaataatcttgcttgcattcaagcc
aaagatcgcatcactgggagaactgagattgcttcttgtgtccgggttgctgaggtggag
caaataagaataacaaacaaggagcttccagtccattcaattgatctcgctgttggtgca
gaaattgaactttcaataagttaccatgatgctataggaaatcccttttacgaggcttct
aatgttattcttcaccatgctgaaactaattatcccgatgtggtctctgttaacaatacc
cgtggcaccaatatgattcatctaaaggcaatgcgacacggtagagctcttctccgagta
tcaattgacaatcgtccacagaagtctgactatatgctgatttcagttggtgcctatgtg
catccccaaaatccagttctccaccaggggagttctattaacttcagcgtagtaggctct
gatgatcaagcttcaggtcactggcatagtgtcaatgaaagtgttatagttttacacact
caatctggacaggcggaagcagttggagagggatcaacccaagtttcttttgaaagttca
aatgtcaagctgcgaacaacagtcacagttctacctggaagtacccttgttgtggatgcc
cccaaggagatgctgacaaatgttccgtttccctcccaaggatttagcttttccgtgaag
ttcagtgatacaaatgacaagatcaacactgttggaagcagtaaaggagccccatatgac
tgtagggtagaccctccttttgtcggctatgcgaagccatggatagaccttgatactggc
aactcgttttgccttttcttcccttactccccagagcatttggtccgcaccatacccaag
ttgaaggacatgaaaccatatatttatgtttccattaatgcttcaatgaaagagcacagc
catgtttctggatctgcatctgcactttttgtcgggggattttccgtaatgcaaatggga
aaggatatagcacagttaaatctgacaccagactttaacaagactatcataaccatcttg
ggaaacacagatgttgaaatccactggcatggccaagatttgttagcaatcaatcccatc
cagaaagaaggatttggtctcagtcgccgcatagattatgaggtaaaagcacttagtgcc
aagcgatttgcagataaaatcattgtcaaactcccatccactggtcaaagagtggaagtg
gatgtcaactatgaaccagatgaaaaatctgaagctactattaacttttccttttgggcg
aaggttatgggaagtattgccctaacagtaatcacactgatcattggcttcatatgtttc
ctcgaccgacctcttggatcatcccagccaccatccactcctctgtgcagttcaagcata
tcagcacctgtcacgccagaccggagaagtccccttcgtttggacgaacaatctccacga
acaccgcagccatttgtagattatgtgagaagaacaatagacgaaactccatactatcgg
cgagaaggtaggaggaggtttaatcctcagaacacatactaa
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