Gossypium hirsutum (upland cotton): 107898830
Help
Entry
107898830 CDS
T04793
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107898830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107898830
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107898830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA
AAA_25
Arf
AAA_23
AAA_15
AAA_30
ORC-CDC6-like
nSTAND3
Zeta_toxin
AAA_7
AAA_28
Motif
Other DBs
NCBI-GeneID:
107898830
NCBI-ProteinID:
XP_016679873
UniProt:
A0A1U8ITY4
LinkDB
All DBs
Position
D11:72577197..72579601
Genome browser
AA seq
329 aa
AA seq
DB search
MAVMESSKPTVEINGLSFTYPGIDGHPPPGSKPLIDGFSLTLNAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSAFHDTVLASSGDLCYLGGEWRRDVAFAGFEVPIQMDIS
AEKMIFGVAGIDPKRRYELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLNFLRKECEERGATIIYATHIFDGLEKWPSHIVYVAHGKLQLAMPMDK
VKEISNSSLMRTVESWLRKERDEERKKRKERKSQGLPELENQTEGSRVTGDPARAAVRSL
NNGWAAGRLNSTVAGEENFVFSSNRVLRQ
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgatggagagttcgaaaccaacggtggagatcaacggattgagcttcacgtat
cctggaatcgacggtcatccaccgccgggatccaagcctcttatcgacggtttctctctc
accctaaacgctggcgatcggtgtctcctcgtcggatccaatggcgccgggaaaacaacg
atattgaagattctgggagggaagcatatggtggagccgcacatggttcgagtattggga
agatccgctttccacgacaccgttttggcttcctccggtgatctttgttatcttggagga
gagtggagacgtgatgttgcttttgcaggattcgaggttccaattcaaatggacatttca
gctgagaaaatgattttcggagttgcaggtattgatcccaaaagaagatatgaactaatt
aaggtattagatattgatctctcgtggaggatgcacaaggtatcggatggtcaaagaaga
cgtgtccaaatttgtatgggtctccttaagccattcaaggttcttctacttgatgagata
acggtcgaccttgatgtgctagcaagagctgaccttctgaatttccttaggaaggaatgc
gaagagcgaggtgccacaattatctacgcaacacatatattcgacggtcttgagaagtgg
ccatcacatattgtttacgttgctcatgggaaattgcaattagcaatgccgatggataag
gttaaggagattagcaattcgtcgctaatgagaacagtggagagctggttgaggaaggaa
cgagacgaagaaagaaagaaaagaaaagagcggaaatcacagggtctcccggaattggaa
aaccaaaccgagggaagccgtgtgacaggggatcctgcccgagctgccgttcgttcacta
aacaatggttgggctgccggacgtttgaactcgacggttgccggtgaagaaaacttcgtg
ttcagctcaaacagagttttaaggcaataa
DBGET
integrated database retrieval system
