KEGG   Gossypium hirsutum (upland cotton): 107904496
Entry
107904496         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107904496
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107904496
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107904496
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107904496
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 107904496
NCBI-ProteinID: XP_016686377
UniProt: A0A1U8J7Q9
LinkDB
Position
D11:complement(1746658..1755302)
AA seq 1472 aa
MKSKPMTSIETDLSEEQEVLAATMTGIKFNVSGDEDNEKMSVMEIVASSQVSDPKLGFPN
LRNHCTTCDARDLGHCEGHFGVIKFPYPIINPYYLSEVVQILNKICLGCKSIRKDLLIKE
DKSASKLRQRKGCKYCVGNSIDWYPPMTFKISSKELFKKSTIVVEVSEDSLMMVRKRGRQ
ALPADYWDFIPKDQQEEEDGLMKPRRRVLSHAQVHYLLKDVDPEFIKKFIQNVDSIFLNC
FPVTPNSHRVTEITHRSSNSQRLIFDERTRLYKRLVDFRGVANELSSHVLDCLKISKASY
SALNKDPVSNMSGLRYMKNVLLGKRNDHCFRMVLTGNPNLKLSEIGIPCPVAERLQIAEQ
LNKWNEERLKACCNLRILEKGEICIRREGTLVRIHHNEKIRLGDIIYRPLNNGDIVLINR
PPSIHQHSFIALSVKVLPVSSSVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELV
SLNRQLINGQSGRNLLSLSHDSLSAAYLVNGDGVLLNLYEMQQLEMFCPNRSPSPAIIKA
PLLSNPVWTGKQLFSMLFPPELDYGFSPSDVVIRNGELITSSEGSSWFRDADGNLFESLI
KNCRGKVLDFLHGAQEVLCEWLSMRGMSVSLLDLYLTPDSNSRKNMMDEIFYGLQETELT
CNFKQLMVDSFCDFLAGNNEEIDGFVGFDFERMCYEKQRSAAVNQASVDSFKQVFRDIQN
LSYKYANKDNSLLTMFKAGSKGNLLKLVQHSMCLGLQRSVVPLSFRFPPKLSCSEWNDLK
SQGLTQNGDDCVESAKNFIPYAVIESSFMTGLNPLECFVHSVTSRDSSFSDHADLPGTLS
RRLMFFLRDLCASYDGTVRNAYGDQVVQFSYGSDKGTSTATSFANELQSQGSILPDGTGG
QPVGSLSACAISEAAYSALDQPISLLETSPLLNLKRVLECGSRRRNSDQTMTLFLSDKLG
KGRHCFEYAALEIKNYLERLIFSDIVSTALITYSPQKSTENCFNPWVCHFHVCKETMKRR
RLSVHSIIGSLQMHYANAKKLWKINLPDIQVTSKSCSHTDMPNKDDMFCITVTIVEPSKR
SHIELDVIQAIVLPSLLEAVVKGFPEIKKVQILWNDRFKVSKSHKTSPGELYLRVAVTGG
FGKTKLWGMLMNDCLPIMDLIDWTRSHPDDINQFCSAYGIDSGWKFFLNNLKSAISDTGK
TILNEHLHLVADCLSVTGEFVGLNSKGLRLRQEHAFVSSPFMQACFSNPSASFVKAAKKG
VSDNLQGTIDALSWGRVPCIGTGAQFDILYSMKDEMITEPVDVYNLLGNIVGSQNQDVEF
EVPQACNIKSEKYVSELMDALGDSAFERLKNIETKILREFLTLNDIQRLSRTLKDILHKS
PIGHRLSGADWNSAMMALYFHPRRDEKVGSGAQEIKVGYHPEHKNSRCFLLARTDGAIVD
FSYHKCVIGALEVIAPDKVQFYKSKWSQSGNL
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgaagtcaaagccgatgacctccattgaaacggacttgtctgaagagcaagaagtgcta
gctgccactatgactggcataaagtttaatgtatcgggtgatgaagataatgagaagatg
tcagtcatggaaattgttgcatcaagtcaggtgtctgaccctaagctggggttcccaaat
ttgaggaatcattgcaccacctgtgacgccagagatttgggacattgtgaaggtcatttt
ggggttattaaatttccttacccaataatcaatccatattatctatcagaagttgtgcag
atattaaataagatttgccttggatgtaaatcaattcgcaaagatctattgataaaggaa
gataagtcggcatccaaactacgccaacgcaaggggtgtaaatattgtgttgggaactca
attgactggtatccaccaatgacattcaagatatcctctaaagagcttttcaaaaaaagc
acaattgtggtagaggtaagtgaagactctttaatgatggtccgaaagagaggaaggcaa
gccttacctgctgattattgggattttattccaaaagatcaacaagaagaagaagatggt
ttgatgaaaccacgtagaagggtcctatcacatgcacaggttcattatttactgaaggat
gttgatccagagttcattaaaaagttcattcagaatgtggactctattttcctcaattgc
tttcctgtgacacccaatagtcatcgagtgacggaaatcactcatagatcttctaattca
cagcgcttgatctttgatgagagaactaggctttacaagagactggttgatttccgagga
gtagctaatgaactgagttcccatgtattggactgcctaaaaatttcaaaggcaagttac
agtgccttgaataaagatcctgtttctaacatgtctggtttaagatacatgaaaaacgtt
cttcttggaaagcgaaatgaccattgcttccgcatggttcttaccggaaatccaaatctt
aaactatcggaaattggtataccatgtcctgttgcagagaggttgcaaattgctgagcaa
ctgaacaagtggaacgaggaaagattgaaagcttgctgtaatttgcgtattcttgagaag
ggtgagatttgtattaggagagaaggtacattagttagaattcatcataatgaaaagatc
cgactgggggacatcatctataggcccctaaataatggggatatcgtgcttataaacaga
cctccttctatacatcagcactctttcattgccctatctgtcaaagttctacctgtgagt
tcctctgtttcgataaacccccttatttgttccccttttcgtggagattttgacggtgat
tgccttcatggctatgttcctcagtccatcaacacaagggttgagctcagcgagcttgtt
tctttgaataggcagctaattaatggccaaagtggccgaaatctactttcactgagtcat
gatagtttatcagctgcttatttggtcaatggtgatggggttctcttgaacttgtacgaa
atgcaacagcttgaaatgttctgtcccaatcgttcaccgtcgccagcaatcatcaaagct
cctttattgagtaatcctgtttggactggaaagcagttattcagcatgctctttcctccc
gaattggattatggtttttctccaagtgatgttgttatccgtaatggggagcttataact
tcatctgagggatcttcttggttccgagatgctgatggcaacctttttgaaagtctcatt
aaaaattgtcgaggaaaggtccttgattttttgcatggtgctcaggaagttctttgtgag
tggttatcaatgaggggtatgagcgtttcactcttggacctatacctaactcctgattca
aattcacgaaagaacatgatggatgaaatcttctatggtctccaagaaacagagctgact
tgcaactttaagcagttaatggttgattccttctgtgatttccttgctggaaataatgaa
gaaattgatggttttgtgggttttgattttgagcggatgtgttatgagaagcaaagatca
gctgcagttaatcaagcttctgttgattcttttaagcaagtttttcgagatatccagaat
ttatcatacaaatatgcaaataaagacaattcattattgaccatgttcaaagcagggagc
aagggtaacttgctgaagctagtgcagcatagcatgtgtcttggactgcaacgttcagtt
gtacctttatcattcaggtttcctcctaaactctcatgttctgaatggaatgatctaaaa
tctcagggcttaacccagaacggtgatgactgtgttgaatctgcaaagaatttcatccca
tatgctgtgatcgaaagttcttttatgacaggcctgaatccactagaatgttttgtgcat
tccgttactagtcgagatagttctttcagcgaccatgctgaccttcctgggacactgtca
cgaaggcttatgttcttcttgcgtgatctatgcgcatcatatgacggaactgtgaggaat
gcatatggagatcaggttgttcagttcagctatggtagtgataagggtacatctactgca
actagttttgctaatgaactacaaagtcagggcagtatcctacctgatggaacaggtggc
caacctgttggttcattgtctgcctgtgccatttctgaggctgcatatagtgctttggat
caaccgattagtctacttgaaacttcaccattgctaaacctgaagagggtccttgaatgt
ggttctagaagaaggaattcagaccagactatgacgctatttttatcggataaacttgga
aaggggagacattgtttcgagtatgcagctttagaaatcaagaattatttggagaggttg
atcttttcggatattgtatctactgccttaataacctactccccgcagaagtcaactgaa
aactgtttcaacccttgggtttgccattttcatgtgtgcaaggagaccatgaaaaggagg
cgcctttcagtgcattctattattggttctcttcagatgcactacgccaatgccaaaaaa
ttatggaaaatcaatttgcctgacatccaagttacaagcaagtcttgttctcatactgat
atgccaaataaagatgatatgttttgtatcaccgtcacgattgttgagccttccaaaagg
tctcatatagaattggatgtgattcaagccatagtgctaccttcccttctggaagcagtt
gtaaaaggattcccggagatcaagaaggtgcaaattttatggaatgatcgattcaaagtc
tcaaaatctcataaaacttctcctggtgaactttacttgagggtagctgtaacaggtggt
tttggtaaaacaaaactctggggcatgcttatgaatgattgccttccaataatggatttg
atcgactggacacgtagtcatccagatgatattaatcagttttgctcggcatatggcata
gattctggatggaaattttttctcaataatttgaagagcgctatatcagataccggcaag
actatactaaatgagcatttgcatcttgtcgccgattgtctgtctgttaccggggagttt
gttggcttaaactcaaaaggcttgagactacgacaagaacatgcatttgtctcatctcct
tttatgcaagcatgcttttcaaatcccagtgcttcctttgtcaaagctgcaaagaaagga
gtttcggataatcttcaggggaccattgatgcattgtcatggggaagagttccttgcatc
gggactggtgcacagtttgatatactgtactctatgaaggatgaaatgatcaccgaaccg
gttgatgtgtataatcttcttggaaatattgttggttctcagaaccaagatgtagagttt
gaagtaccccaagcttgtaacatcaagtccgagaaatatgtctctgaacttatggatgca
cttggtgattctgcctttgaacggctgaaaaatattgaaacaaaaatattgagagaattt
ctgacgttaaatgacattcagaggctttcgcgaactttaaaggatatattgcacaagtct
cctattggccaccggttaagcggagctgactggaattccgcaatgatggcattgtacttt
catcctcgaagagatgagaaggtcggatctggagctcaagaaataaaggtagggtatcac
cctgaacataaaaattctcgctgctttcttttggcaaggaccgatggggcaatcgtagat
ttctcgtatcataaatgcgttatcggggctcttgaggtcatcgcccccgataaggtccaa
ttctacaagtcaaaatggtcacaatccggtaatctgtaa

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