Gossypium hirsutum (upland cotton): 107914111
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Entry
107914111 CDS
T04793
Name
(RefSeq) sm-like protein LSM3B
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107914111
09123 Folding, sorting and degradation
03018 RNA degradation
107914111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107914111
03041 Spliceosome [BR:
ghi03041
]
107914111
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107914111
mRNA degradation factors
5'-3' decay
Lsm complex
107914111
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107914111
Complex C
U2 snRNP components
107914111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
107914111
NCBI-ProteinID:
XP_016698355
UniProt:
A0A1U8K781
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Position
A05:complement(25804067..25806061)
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AA seq
97 aa
AA seq
DB search
MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE
IDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgaggaagagagcgcggtgaaggagcctttggatttgataaggctcagcctc
gacgagcgtatttacgtcaagctccgctctgaccgtgagctccgtggcaagctccatgct
tatgatcagcatttgaatatgattctaggtgatgttgaagaggttgttacaacggttgaa
atagatgatgaaacctatgaagagattgttcggactacaaagcgcacggttccatttctc
tttgttaggggagatggagttatattggtttctccacctctacggactgcttga
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