Gossypium hirsutum (upland cotton): 107927211
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Entry
107927211 CDS
T04793
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107927211
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107927211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107927211
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
107927211
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Gene cluster
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
107927211
NCBI-ProteinID:
XP_040960681
UniProt:
A0ABM3B0W1
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Position
D11:62744644..62750494
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AA seq
710 aa
AA seq
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MPLSELYRMARGKLDSSQDKNPSNSTDPSIVPEDDFFELVWENGQISMQGQSSVARKVPA
CNSLQSHSFKIRDKYIGNGGNSSKMGKFGVVDAVSSEVPMSAPSHDDDVVPWLKYSENEC
SDMFPGLSGLTTNKIPTDGSLASFNQRRQSISDSFTVSLNAAADFKQGKLAKVPKPADDE
ARLRSGTSESPQLCQVSSSYLRSRNLESIGNNSSHAFFRDTMGVQPSDETLRGVKMQKQD
PVAPCNNTVLMNFSHFSRPAALVKASLQNIGAMARIESKETGFAASTRGPVDSKAIDSNI
KLQRENFLHCHSTIVPMKTDIKQSEAKSLDEPVAAEPNDAICEEYVLKSDKISSQVIDEN
ASKCLPESGKAVESVLAASVCCENSVERASDDPVVHNLKRKNHDNEEFECPSEDAEEEPV
GVKKAVPTRGVKGFKRSRAAEVHNLSERRRRDRINEKMHALQELIPNCNKVDKASMLDEA
IDYLKTLQLQVQIMSMRAGLSVPPMMLPTGMQHMHATQMAYFSSMGFGMGLGMGFGMPFP
ETNTIASAFPMVQVPPVCGAPFSGSGPHLSGSTAFHEMPGANLPLYGLHGQGLPMSMPGA
PLFPIPGGHLMKSAIGLSACGLGGPMDNMDSATASSSKDPIQNINSQVAQNTNINSSMNQ
TSTQYQTANESFQQPAEVQENGRASEITGSVPFRSTDGDKKLPDSVGYNC
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcctctatccgagctatatcgtatggctagggggaagctcgattcatctcaagacaag
aacccttcaaattcaactgatccatctattgtacctgaggatgatttttttgaactggtt
tgggagaatggtcaaatttcgatgcaaggtcagtctagtgtagctagaaaggttcctgct
tgtaacagcttacaatcccacagttttaagattagagataaatatataggcaatggagga
aatagttcaaaaatgggaaagtttggggtggtggatgcggtatcgagtgaagttccaatg
tcggcgccgtctcatgatgatgatgtggtgccttggttaaagtactcagagaatgaatgt
tctgatatgtttcctggattatctgggctcactacaaataagatcccaactgatggtagc
ttagcttcatttaatcaaagacgccaatccatcagtgattcctttactgtttctctgaat
gctgctgcggatttcaaacaaggaaagttagcaaaggttcctaaaccggcagatgacgaa
gctaggctgagaagtggtaccagcgagtcgccacagctatgtcaagtgtcttcatcgtat
cttagatcaagaaatttagagagtattggtaataactcgagccatgcctttttcagagac
acgatgggagttcaaccgtcagatgagactttgcgtggtgttaagatgcagaaacaagat
ccagttgcaccttgtaataataccgtcttgatgaatttttcccatttttcacgtcctgct
gctcttgttaaagctagtcttcagaatataggtgctatggctaggattgagagtaaggaa
acagggtttgcagccagtactaggggccctgttgattccaaggccattgattcaaatatc
aagttacagagggaaaactttttacattgccattctacaatagtgccgatgaagactgat
ataaaacaatctgaagctaagtctctagatgagccagttgctgctgaaccaaatgatgcc
atctgtgaagaatatgtcctgaaaagtgataaaatatctagtcaagttattgatgaaaat
gcttccaaatgcctgccagagagtggtaaggctgtagagtctgtgcttgctgcttctgtt
tgctgtgaaaatagtgtagaaagagcttctgacgatccagtagtacataatttgaagaga
aaaaaccatgataatgaggagtttgaatgtcctagcgaagatgctgaagaagaacctgta
ggtgtgaaaaaagcagttcccactcgaggagttaaggggttcaagagaagccgggcagct
gaagtgcataatttatctgaaaggaggcgaagggataggataaatgagaagatgcatgct
ttacaggagctcatacctaactgcaacaaggtggacaaagcttcaatgcttgatgaagca
attgactatcttaagacactccaactacaagtgcagattatgtctatgcgagctggctta
tctgtgccaccgatgatgttgccaactggaatgcaacacatgcatgccactcaaatggcg
tatttttcatccatgggttttggaatgggtctaggtatgggttttgggatgccatttcct
gaaacgaatactatagcttctgctttccctatggttcaggtgcctccagtctgtggagca
cctttttctggctcaggccctcatttgtcaggttcgactgcattccatgagatgccagga
gctaacctcccgctatatggtcttcatggtcaaggacttccaatgtcgatgccaggtgca
cctttgtttcctattcctggtggacacctcatgaaatcagccattggattgagtgcctgt
ggactgggaggtcctatggacaatatggattcagctacagcttctagttcaaaggaccca
attcagaatatcaactcacaagtggcacagaatactaacatcaatagctcaatgaatcag
acatctactcagtaccaaacagcaaatgaaagttttcaacagccagctgaagtgcaagag
aatggtcgagcctcagaaatcactggtagtgtaccttttagatcaactgatggagataag
aagttacctgatagtgtaggttataattgttag
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