KEGG   Gossypium hirsutum (upland cotton): 107930048
Entry
107930048         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107930048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107930048
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107930048
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107930048
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 107930048
NCBI-ProteinID: XP_016717097
UniProt: A0A1U8LUJ3
LinkDB
Position
D08:complement(60278597..60290472)
AA seq 1481 aa
MASMESDSSEEQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHC
TTCDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIA
RLLETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPAD
YWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVDPEFIKKFISEADSIFLNFFPVTPN
SHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTE
DSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAE
KLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDG
DTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTR
VELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSP
LPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSDVVIHNGDLICSSEGSSWLRDADG
NLFQSLIKHFQGKVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYG
LQEAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQICYEKQRSAALSQASVDSFKQ
VFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSC
AAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNA
DLPGTLSRRLMFFMRDLCTAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQGNS
LPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSL
FLSGKLVRRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVF
KDIVKRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSIIDMENEDDTFCITVT
IVECKTSRIELDVIQDMVIPSLLEAVVKGFPEIKKVEILWNEDFRVPNSHKPAPGELYLR
VSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSA
ISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACFV
KAAKTGVADNLQGTIDLLAWGRVPRIGTGGQFDIVYSMKDEELAEPVDVYKLLGDSINSK
KQDIEFEVPKVFNPTSEKHSSPFKGALRDSVFDEWKKIETKTRSLLRGRLTLNDVQRLER
NVKNILRKYPIDHRVSEADWDTLMMALYFHPHRVEKIGSGAKEIKVGHHPDHADSRCFFL
VRTDETTVDFSYRKCVVGALEIIAPCRAQSYKSKWLQHGSL
NT seq 4446 nt   +upstreamnt  +downstreamnt
atggcctccatggaaagtgactcatctgaagagcaagaaaattcaactgcctttctgact
ggcataaaatttcatgtctcgaacgacgctgataatgagaacatgtctatcttggaaatt
actgcacccagtgaggtgtctgatcctaggttggggtttccgaatttttctaatcattgc
accacttgtgatgccagagatatgaaacaatgtgaaggccattttggggttattaaattt
ccatacacaatactccatccattttttctttcagaagttgtacatatattaaataagatt
tgcccaggatgtaaatcgatccggaaagatctatggatgaagggtgctaattctatagcc
agattacttgaaaccaaggggtgtaaatattgtgttgggaattcaatagagtggtatcca
cccatgcgattcaagataacctcgaaagagcttttcagaaaaagtgcaatcatggtagag
gtaagtgaaaattctttaatgaaggtccggaagagaggaaggcaagcattacctgcagat
tactgggactttattccaaaagatcaacaacaagaagaaggttttgtgaaaccaggtaga
agagtcctatcacatgcccaggttcgacatttgttgaaggacgttgatccagagttcatt
aaaaagtttatttcagaagcagactctattttcctcaatttttttcctgtgacacccaat
agtcaccgagtgacagaaatcatgcatacatcttctaatgcgcagcgattgatctttgat
gaaagaaccagggtttacaagaaactggttgacttcagagggctagcaaatgaattgagc
tctcatgtattggaatgcctaaaaatttctaagctgcatgtggagaagccatcaactgaa
gattctgcactcattgctgctctgaaaaagaataaagattctgcttccaacatgtcaggt
ttaagatatatgaaagatgttattcttgggaagagaaacgaccattgcttccgcatggtt
cttactggaaacccaaatcttaaactgtctgaaattggtatcccatgtcatgttgccgag
aaattgcaaatcgctgagcaactgaacaggtggaatgaggagagattgaaaacttgttgt
aatctgcgtattcttgagaagggtgagattcgcattaggagagaaggtaaattagttaga
attcgtcataatgaaaaggtccaagtaggggacactatctataggcccctaaatgatggg
gatacagtacttataaatagacctccttctatacatcagcactctctcattgcgctatct
gttaaagttctacctgtcaattcagttgtttcgataaaccctctaatatgttcccctttt
cgtggagattttgatggtgattgccttcatggttatgttcctcagtccattaacacaagg
gttgagctcagtgagcttgtttctttggataggcagctaattaatggccaaagtggtcga
aatctgctttcactcagtcatgatagtttaacggctgcttatttggtcaaggaggacggg
gtactattgaacctgttccagatgcaacagctggaaatgttctgtcctaatcattcacca
ttgccagccattgtcaaagctcctttgctaagtaatcctgtttggactggaaagcagtta
tttagcatgctctttcctcccgaatttgattatgtttttgcaccaagtgatgttgtaatc
cacaatggggatctcatatgttcttctgaagggtcttcttggctacgagatgctgacggc
aacctttttcaaagtcttattaagcatttccaaggaaaggtccttgactttttgcatgct
gctcaggaagttctttgtgagtggttgtcaatgaggggtttgagtgtttcactcttggac
ctatatctatctcctgacacagattcacaaaagaacatgatggatgaaatcttctatggt
ctgcaagaagcagagcagacatgtaacttcaagcagttaatggttgattcttgtcaagat
ttccttgctggaaacgatgaagaaactaataggttcatggttttggatgttgagcagatt
tgctatgagaaacaaagatctgctgcacttagccaagcttctgttgattcatttaagcaa
gttttccgtgatattcagaatttactctacaagtatgcaaataaagacaattcattattc
accatgttcaaagcagggagcaagggtaacttgctgaagttagtacagcatagtatgtgt
cttggattgcaacattcacttgtccctttatcattcagatttcctcatcagctctcatgt
gctgcatggaataatcaaaagtctcacatcttaacccaaaaggttgatgatactgatgag
tctgctaagaaatatatcccctatgctgtggtcgaaagttcgtttgtgaagggtctgaat
ccattagaatgttttgttcattcagtgactactcgagacacatctttcagtgacaatgct
gaccttcctgggacgctgtcacgaaggttgatgttcttcatgcgtgatctatgcacagca
tatgatggaactgtgaggaatgcatatggagatcaggttgttcagttctgttataatatc
gataagggtacatttagtccaactagttgccctgacaaattagtaagtcagggcaatagt
cttcctgatggaataggtggacaacctgttggttcattatctgcctgtgccatttctgag
gctgcatatagtgcattggatcagccaattagtctacttgaatcttctccattgctgaac
ttgaagagggtccttgagtgtggttctaaaagaagcaatgctgaccagactatgtcacta
tttttatctggtaaacttgtaaggagaaggcacggtcaggagtatggagccttagaagtc
aagaatcatttggagaggctgatctttaaagatattgtgtctactgtctcaataatcttc
tctccacagatgtctagtgaaaaccgtttcagtccttgggtttgccattttcatgtgttt
aaggatattgtgaaaaggaggaggctaacagtgcattctattattgatgctcttcacatg
cactgcacgaatgccaaaagactatggaaaatcaatttgcccgacatgcaagttacaagc
aaggcctgttctattattgacatggaaaatgaagatgatacgttttgtatcactgtcaca
attgttgaatgtaaaacttctcgtatagaactggatgtgattcaagacatggtgatacct
tcccttctggaagcagtggtaaaaggattcccggagatcaagaaggtggaaattctatgg
aatgaggatttcagagtcccaaattctcataaacctgctcctggtgaactttacttgagg
gtttctgtatctggcgattttggtataacgaaactctggagtgtgcttatgaatgattgc
ctccaactaatggatataatcgattggacacggagtcatccagataacattaatcagttt
tgcttggcattcggaatagatgctggatggagattctttctcaataatatgaagagtgca
atatcagatactggcaagtctatactaaatgaacatctgcaccttgctgccaattgtctg
tcagctaccggggagtttgttggtttaaattcaaaaggcttgaaacaacaaagagaacat
gcatttgtctcttctcctttcatgcaagcatgcttttcaaaccctagtgcttgctttgtc
aaagctgcaaagactggagttgcggataatcttcaagggaccattgacctattggcttgg
ggaagggttcctcgtattgggactggtggacagtttgatatagtctattctatgaaggat
gaagagcttgcagaaccggttgatgtgtataagctgctaggagattctattaattccaag
aagcaggatatagagtttgaagtacctaaagtttttaaccctacatctgagaaacatagt
tctccgttcaagggagctcttcgtgactctgtctttgatgagtggaagaagattgaaacg
aaaacaaggtcactcttgagaggacgtctaaccttgaatgacgttcagaggcttgagcgt
aatgtaaagaatattttgcgcaaatatcctattgatcaccgtgtaagtgaagctgactgg
gataccttgatgatggcgttgtactttcaccctcatagagttgagaagatcggatctgga
gctaaggaaataaaggtagggcatcatcccgatcatgcagacagtcgttgtttctttttg
gttagaacagatgagacaactgtagatttctcatatcggaaatgtgttgtcggtgcactc
gagatcattgctccttgtagggcacaatcctacaagtcaaaatggttacaacatggtagt
ttgtaa

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