Gossypium hirsutum (upland cotton): 107938017
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Entry
107938017 CDS
T04793
Name
(RefSeq) probable E3 ubiquitin-protein ligase RZFP34
KO
K10144
RING finger and CHY zinc finger domain-containing protein 1 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107938017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107938017
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107938017
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107938017
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zinc_ribbon_6
zf-CHY
zf-RING_2
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-RING_11
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
107938017
NCBI-ProteinID:
XP_016726531
UniProt:
A0A1U8MI64
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All DBs
Position
A13:complement(108127665..108133403)
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AA seq
315 aa
AA seq
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MSFSMEEVEIKHSGAEELSYQQQNESCEAFEEEARGSFSSQSGGICVDKQESNDAEATEL
LDKGFMEYGCPHYRRRCRIRAPCCGEIFDCRHCHNEAKNNINVDQKLRHDLPRRQISKII
CSLCGTEQEAQQVCINCGVCMGKYFCNTCKLFDDDTSKRQYHCDGCGICRIGGQENFFHC
HKCGCCYSILLKNSHPCVEGAMHHDCPICFEFLFESRQDVTILPCGHTIHTNCLKEMRDH
FQYACPLCSKSVCDMSKVWEKFDEEIAAAPMPEEYHNKIVSILCNDCGTKSLVRFHVLAQ
KCPNCKSYNTRQTRG
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcaatggaagaagtggaaattaagcattctggagctgaagagcttagctat
cagcaacaaaatgaaagctgcgaagcatttgaagaagaggcgaggggatcattctcatca
cagtcaggtggaatttgtgtggataaacaagaatcaaatgatgcagaagcaactgaattg
ctggacaaggggtttatggagtatggttgcccacattatcgaagaaggtgccggattaga
gctccctgttgtggtgagatatttgattgtcgtcactgtcataatgaggcaaagaacaat
atcaatgttgaccagaagctcagacatgatctcccacgccgtcaaatcagtaagattatt
tgttcgctatgtggcacagaacaagaggctcaacaagtttgcatcaactgtggtgtttgt
atgggaaaatatttctgcaacacctgcaaactttttgatgatgatacatcgaagagacag
tatcattgtgatggttgtgggatctgtaggattggagggcaggagaacttcttccattgc
cacaagtgtggttgctgctattcaattcttctgaaaaatagccatccctgtgttgaagga
gcgatgcaccatgactgtcccatatgctttgagttcttgttcgaatcaagacaggatgta
actattctgccatgcggacatacaattcacacaaattgtttgaaggaaatgagggaccat
ttccaatatgcctgccctctgtgctccaaatcggtttgtgacatgtcaaaggtctgggaa
aaatttgatgaggagatcgcagctgcgccaatgccggaagagtaccataacaaaattgtt
tcgatcctttgcaacgattgtgggacaaaatctctagttcggtttcatgtcctggctcag
aaatgtccgaattgcaagtcatacaatactaggcaaacacgaggctga
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