Gossypium hirsutum (upland cotton): 107938433
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Entry
107938433 CDS
T04793
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107938433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107938433
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107938433
Complex C
U5 SnRNP specific factors
107938433
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Ras
Septin
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
107938433
NCBI-ProteinID:
XP_016727121
UniProt:
A0A1U8MJW9
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All DBs
Position
D13:64043266..64048952
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AA seq
990 aa
AA seq
DB search
MDDNLYDEFGNYIGPDIESDQGSEGEEEEDEDLPDRHVQEEGQQSDGEAPDGVSNGWITA
ANDVDMDNQIVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVKNIKFEVGVK
DSSTYVSTQFLIGLMSNPGLIRNVALVGHLQHGKTVFMDMLVEQTHHMNTFDQNSEKHMR
YTDTRIDEQERRISIKAIPMSLVLEDSNGKSYLCNIMDTPGHVNFSDEMTAALRLADGAV
LIVDAAEGVMVNTERAIRHAIQERIPIVVVINKVDRLITELKLPPKDAYHKLRHTLEVIN
NHISAASTTAGNVSVIDPAAGNVCFASASAGWSFTLQSFAKLCVKLHGIPFDAEKFASRL
WGDIYYHPDTRAFKRKPPAGGGERSFVEFVLEPLYKIYSQVIGEHRKSVESTLAELGVTL
SNAAYKLNVRPLLRLACSTVFGSASGFTDLLVQHIPSPKDAAAKKVDHTYTGPKYSMIYK
AMVGCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGRIQTGQSLRVLGEGYSPDDEEDMT
IKEVTKLWIYQARYRIPISSAPPGSWVLIEGVDASIMKTATLCNIDLDEDVYIFRPLQFN
TLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKD
LRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENG
VVSVDWSRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKGLLGSVR
DSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIASEPLHRGSGQIIPTARRVAYSAFLMA
TPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYLVKAFLPVIESFGF
ETDLRYHTQGQAFCLSVFNHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGM
SEDVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatgataacttgtatgatgaatttggtaactatattggacctgatatcgagtcagac
caagggagtgaaggtgaggaagaagaagatgaagaccttcctgacaggcatgtccaagag
gagggacagcaatctgatggggaggctccagatggggtgtctaatggatggattacagct
gctaatgatgttgatatggataatcagattgttcttgctgaggacaagaagtattaccca
actgcggaagaggtttatggtgaggatgttgagaccttggttatggatgaagatgagcag
cctcttgagcaacctattatcaagcctgttaagaatatcaagtttgaggtcggagttaag
gattcttcgacttatgtgtcgacccagtttcttattggtttgatgtcaaaccccggtttg
atccgcaatgttgccctcgttggacacttgcagcatgggaagacggtgtttatggacatg
ttggttgagcaaacccaccatatgaacacgtttgatcaaaatagtgagaagcacatgaga
tacactgatacaagaattgatgagcaagaaagaaggatatctattaaggcaatcccgatg
tcacttgttcttgaggacagtaatgggaaatcctatctctgtaatatcatggacactcct
ggtcatgtgaatttttctgatgaaatgactgctgctcttaggcttgctgacggtgccgtg
ttgattgttgatgcagctgaaggagtgatggtaaatactgagagggctatacgccatgca
atacaggaacgcatacctattgtagttgttataaacaaggttgaccggctgataacagaa
cttaagttgccccccaaggatgcttatcataaactaaggcataccctggaagtaattaat
aaccatatatctgcagcctctacaaccgctggtaatgtttcagttattgatcctgctgct
ggaaatgtttgttttgctagtgcaagtgcaggatggtccttcactttgcagtcatttgca
aaattatgtgtcaaactacatggaattccatttgatgctgagaagtttgcatctcgtctt
tggggtgatatttattatcatcctgataccagggcttttaaaaggaaaccccctgctggc
ggaggagaacgatcatttgttgaatttgtgcttgaacccctttataagatatatagccag
gtgattggtgaacataggaagagtgtagagtcgactctcgcagagttgggtgtcactctt
agcaatgctgcttacaagttaaatgttaggcctttgctaaggctggcttgcagcacagtt
tttggttcagcctcaggcttcactgatttgctggttcaacacataccatctccaaaggat
gctgcagctaagaaggttgatcacacttacacaggacctaaatattctatgatttacaag
gccatggtaggatgtgatccatctggtccccttatggtcaatgtgaccaaactatatccc
aagtccgattgtagtgttttcgatgcttttggtagggtttacagtggtagaattcaaact
gggcagtctttgagagtactgggagaaggctattcaccagatgacgaggaggacatgaca
ataaaagaagtaaccaaattatggatctaccaagctcgatacagaataccaataagcagt
gctcctcctggttcttgggttcttattgaaggtgttgatgcttcaattatgaaaactgcc
accctctgtaatatagatcttgatgaagatgtatacattttccggccgttacagtttaat
actcttcctgttgtaaaaacagctactgagcctttaaatcctagtgagttgcccaaaatg
gtggaggggcttcggaagatcagcaaaagctatcctctagcaattactaaagttgaggaa
tctggtgagcacactatattaggtactggagagttgtacttggactcaattatgaaggac
cttagggagctttattcagaggtggaagttaaggtggcagatcctgttgtttcattctgt
gaaacagtggtggagtcttcatccatgaaatgctttgctgaaacacccaacaagaagaat
aaaataaccatgattgcagagccattggagagaggtcttgcggaggacattgagaatggt
gttgtaagtgttgactggagtcggaagcaacttggtgacttcttcaagacaaaatatgac
tgggatttgcttgctgcacgttccatctgggcatttggccctgataagcagggacctaac
attttattagatgatacactccctactgaggttgacaagggattgttgggatctgtcagg
gattctattgtccaaggatttcagtggggtgctcgagaaggacctctctgtgatgaacct
attagaaatgtgaagttcaaaatagttgatgcaaggattgcatctgaaccattgcatcga
ggatctggacagatcatccccacagctcgacgtgtggcctattcagctttccttatggcg
accccacggcttatggaacctgtatattatgtggagatacaaacaccaatcgactgtgtc
tctgctatctacacggtgttgtctcgtaggcgtggtcatgttacagctgatgtgccacag
ccaggaaccccggcctatcttgtgaaggcatttttacctgtgatagagtcattcggattt
gagacagacctgaggtaccacacacaaggtcaagccttttgtctctcagtattcaaccac
tgggccatagttcctggagaccctttggacaagagcattgttttgcgacctcttgaaccc
gcaccaatacagcaccttgctcgggagttcatggtaaagacaaggcgtagaaagggaatg
agtgaagatgtgagcatcaacaagttctttgacgaggctatggtggtggagctagctcag
caggctgccgatcttcatcagcagatgatataa
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