Gossypium hirsutum (upland cotton): 107939671
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Entry
107939671 CDS
T04793
Name
(RefSeq) isoleucine--tRNA ligase, cytoplasmic isoform X1
KO
K01870
isoleucyl-tRNA synthetase [EC:
6.1.1.5
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
107939671
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ghi01007
]
107939671
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107939671
Enzymes [BR:
ghi01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.5 isoleucine---tRNA ligase
107939671
Amino acid related enzymes [BR:
ghi01007
]
Aminoacyl-tRNA synthetase
Class I (U)
107939671
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
107939671
Prokaryotic type
Other AARSs
107939671
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
DUF5915
tRNA-synt_1g
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
107939671
NCBI-ProteinID:
XP_016728520
UniProt:
A0A1U8MNZ5
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Position
A01:119628705..119641969
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AA seq
1184 aa
AA seq
DB search
MEEVCEGKDFSFPSQEEHILSYWSQIDAFKGQLARTQNLPEYIFYDGPPFATGLPHYGHI
LAGTIKDIVTRFQSMTGHHVTRRFGWDCHGLPVENEIDRKLGIKRRDQILEMGIDKYNEE
CRSIVTRYVEEWETIITRTGRWIDFKNDYKTMDLKFMESVWWVFAQLYQKGLIYKGFKVM
PYSTGCKTPLSNFEAGENYKLVPDPEIMVAFPIVGDPDNAAFVAWTTTPWTLPSNLALCV
NANFVYVKVRNKYSGKIYVVAESRLSELPTEKPKPNAANGPSGDSKKSKSKGSSGEKTKD
SAADSFEVLEKFSGASLVGKKYEPLFNYFLEFSDAAFRVIADNYVTDDSGTGIVHCAPAF
GEDDYRVCIGNQIINKGENLIVAVDDDGCFTGKITDFSGCYVKDADKDIIEALKAKGRLV
KQGTFTHSYPFCWRSDTPLIYRAVPSWFVRVEQLKEQLLDNNKQTYWVPDYVKDKRFHNW
LENARDWAISRSRFWGTPIPVWISEDGEEVIVMDSVEKLERLSGAKVFDLHRHNIDHITV
PSSRGPEFGVLRRIDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRG
WFYTLMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKRLKNYPSPMEVINDYGADALRLY
LINSPVVRAETLRFKKDGVFGVVKDVFLPWYNAYRFLVQNAKRLEYEGSAPFVPIAVAVI
QKSSNVLDQWINSATQSLVHFVREEMDAYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGR
TGEEDCRMALSTLYNVLLTSCKVMAPFTPFFTEVLYQNMRKICDGAEESIHYCSFPQEEG
KRGERIEESVARMMKIIDLARNIRERHNKPLKTPLREMVVVHPDEDFLGDIVGKLREYVL
EELNIRSLVTCKDTLKYASIRAEPDFSVLGKRLGKAMGAVAKEIKAMSQEDILALTKAGE
VTIATHCLKLTEIKLVREFKHPDGMTDKEMDASGDGDVLVVLDIRPDESLFEAGVAREVV
NRIQKSRKKAGLEPTDMVEVYFESLDEDKSVIQQVLNSQENYIKDAIGSPLLSSDIMPLH
AVVLSEEIFHGIYNMSFKISLVRPALVFKANSILALYSGNSKFAQGLQIYLLSRDHSCLK
SEFQLGRGKIKVDCIENLPAVEVKLGEHVFLTVGDYYLTERKSH
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtgtgcgagggaaaggacttctccttcccttcccaagaggagcacatacta
tcttactggtcccaaatagatgccttcaagggtcagctggctcgcacccaaaacttgcct
gaatacatcttttatgacggtccacccttcgccaccggtctccctcattatggccacatc
ctcgctggcaccattaaagatattgtcactcgcttccagtctatgactggacatcatgtc
acccgccgttttggttgggactgccatggtctccccgtagagaacgaaatcgaccgcaag
ctcggaattaagcgccgcgatcaaattctcgagatgggtatcgataagtacaatgaggaa
tgcaggagtatagtcactaggtatgtcgaggagtgggagactatcattaccaggactggg
cgttggatcgatttcaaaaatgattataagaccatggacttgaagtttatggagtccgtg
tggtgggtttttgcccagctttaccaaaagggacttatctataaaggatttaaggtcatg
ccttatagtactgggtgcaagaccccgttatctaattttgaagctggtgagaactacaag
cttgtgcctgatcctgaaataatggtggctttccccatagttggtgatccagataacgct
gctttcgtggcttggacaacaacaccatggacccttcctagtaatcttgcactttgtgtc
aacgcaaattttgtctatgtaaaggttcgcaataagtactctggaaaaatctatgtggtt
gctgagtcaaggttgtctgaacttccaactgagaaaccaaagccaaatgctgctaatggg
ccttctggtgattccaagaaatctaagagcaaaggatcttctggcgaaaagactaaagat
tctgcggcagattcctttgaagttttagaaaaattttctggggcttcactagtggggaaa
aagtatgaaccattgttcaactacttcttggagttctcggatgccgcttttagggtgatt
gctgacaattatgtgacagatgacagtggtactggaattgtacactgtgctcctgcattt
ggtgaagacgattaccgagtttgcattgggaatcaaataatcaataagggtgagaatctg
attgtggcagttgatgatgatggttgctttactgggaaaattactgattttagtggatgc
tatgttaaggatgctgataaggatattattgaagcattgaaggcaaaaggcaggcttgtt
aagcagggaacctttacacattcttatccattttgttggagatctgatactcctcttatt
tatagagctgttccaagctggtttgtgcgggtggaacaactgaaagagcaattattagat
aacaacaaacagacctactgggtacctgattatgtgaaggataaacgttttcacaattgg
ctggaaaatgcaagagactgggctattagtcgaagtagattttggggcactcccattcct
gtgtggattagtgaagatggtgaggaagtaatagtcatggattctgttgaaaaactcgaa
aggctttccggtgctaaggtctttgatctccatcggcacaatattgatcatatcactgta
ccttctagccgtggtccagaatttggtgtgctacgacgtatagatgatgtatttgattgt
tggtttgagagtggatcaatgccttatgcttacatccattatccatttgagaatgttgaa
ctttttgagaaaaattttcccgggcattttgtggctgagggattagatcaaactcgtgga
tggttttacactcttatggtgttgtcaactgcattatttgggaaacctgcatttagaaat
ctcatttgcaatgggcttgtgcttgctgaagatggaaagaagatgagtaaaagattgaaa
aattatccttcacccatggaagtcattaatgactatggggctgatgctttacgattgtac
cttataaactccccagttgttcgggctgagaccttacgctttaaaaaagatggagtcttt
ggtgttgtcaaagatgtctttctcccatggtataatgcgtataggttccttgttcagaat
gctaaaagactcgagtatgagggttctgccccatttgttcctattgctgtcgctgttatt
cagaagtcatctaatgtgcttgaccaatggataaactctgcaactcaaagtcttgttcat
tttgttcgagaggaaatggatgcatatcgactttatacggtggtgccatatctattgaag
tttcttgacaacctcacaaatatatatgtgagattcaaccgtaagagactcaaaggccgt
actggagaggaagactgccggatggcactctctactctttataatgtgcttctgacttca
tgtaaggttatggccccctttacaccattcttcactgaggttctttatcaaaacatgcga
aaaatctgtgatggagcagaggaaagcatccattattgtagtttccctcaagaagaagga
aagaggggggagcgaattgaagaaagtgtggctagaatgatgaagataattgaccttgcc
cgcaacattcgcgagcgtcacaacaagcctctcaaaacacctctgagggagatggtagtt
gttcatccggatgaggactttcttggtgacatagttggcaaattaagagagtatgtactg
gaggagctgaatataaggtctcttgttacatgtaaggacactttgaagtatgcatccatt
cgtgcagagcctgattttagcgtattaggtaagcgactaggaaaagctatgggagctgtt
gccaaggaaatcaaagccatgtctcaggaagatatcttagctcttacgaaagctggagag
gtgactattgctacacactgtttgaagctgactgaaattaagcttgtgcgggaatttaaa
catcctgatggcatgacagataaagagatggatgcatctggagatggtgatgttttggtg
gttttggatatacgtcctgatgagtcattgtttgaagctggtgttgcacgtgaggtggtt
aatagaattcaaaaatcacgaaagaaagctggccttgagccgacagatatggtggaggtc
tactttgagtcattggatgaagacaagtcagtcatccagcaagttttaaactcacaggaa
aactacattaaggatgcaattggatctccattgctttcctctgacattatgccgctccat
gcagtggtgcttagcgaagagattttccatggcatctataacatgtcatttaaaataagc
ttggtcagaccagcccttgttttcaaggcaaattctattctcgccttatattcaggaaat
tctaaatttgcacaaggcctgcagatttaccttctgtcaagggaccattcctgtttgaag
tcggagtttcagcttggacgtggcaagataaaggttgattgcattgagaacttgcccgca
gtggaagtgaagctgggagaacatgtcttcttgacagtgggtgattactatttgacagaa
cggaagagccattga
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integrated database retrieval system
