Gossypium hirsutum (upland cotton): 107944005
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Entry
107944005 CDS
T04793
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107944005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107944005
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107944005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
AAA_25
AAA
Arf
AAA_23
AAA_15
AAA_30
ORC-CDC6-like
RsgA_GTPase
Zeta_toxin
nSTAND3
AAA_7
Motif
Other DBs
NCBI-GeneID:
107944005
NCBI-ProteinID:
XP_040936297
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Position
A11:123925813..123928117
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AA seq
329 aa
AA seq
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MAVMESSKPTVEINGLSFTYPGIDGHPPPGSKPLIDGFSLTLNAGDRCLLVGSNGAGKTT
ILKILGGKHMVEPHMVRVLGRSGFHDTVLASSGDLCYLGGEWRRDVAFAGFEVPIQMDIS
AEKMIFGVAGIDPKRRDELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLNFLRKECEERGATIIYATHIFDGLEKWPSHIVYVAHGKLQLAMPMDK
VKEISNSSLMRTVESWLRKERDEERKKRKERKSQGLPEFENQTEGSRVTGDPARAAVRSL
NNGWAAGRLNSTVAGEENFVFSSNRVLRQ
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgatggagagttcgaaaccaacggtggagatcaacggattgagcttcacgtat
cctggaatcgacggtcatccaccgccgggatccaagcctcttatcgacggtttctccctc
accctaaacgctggcgatcggtgtctcctcgtcggatccaatggcgccgggaaaacaacg
atattgaagattctgggagggaagcatatggtggagccgcacatggttcgagtattggga
agatccggtttccacgacaccgttttggcttcctccggtgatctttgttatcttggagga
gagtggagacgtgatgttgcttttgcaggattcgaggttccaattcaaatggacatttca
gccgagaaaatgattttcggagttgcaggtattgatcccaaaagaagagatgaactaatt
aaggtattagatattgatctttcgtggaggatgcacaaggtatcggatggtcaaagaaga
cgtgtccaaatttgtatgggtctccttaagccattcaaggttcttctacttgatgagata
acggtggaccttgatgtgctagcaagagctgaccttctgaatttccttaggaaggaatgc
gaagagcgaggtgccacgatcatctacgcaacacatatattcgacggtcttgagaagtgg
ccatcacatattgtttacgttgctcatgggaaattgcaattagcaatgccgatggataag
gttaaggagattagcaattcgtcgcttatgagaacagtggagagctggttgaggaaagaa
cgagacgaagagagaaagaaaagaaaagagcggaaatcacaggggctcccggaattcgaa
aaccaaaccgagggaagccgtgtgacaggggatcctgcccgagccgctgttcgttcacta
aacaacggttgggctgccgggcggttgaactcgacggttgccggtgaagaaaactttgtg
ttcagctcaaacagagttttaaggcaataa
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