Gossypium hirsutum (upland cotton): 107945963
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Entry
107945963 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
107945963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107945963
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
107945963
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
107945963
NCBI-ProteinID:
XP_016735628
UniProt:
A0A1U8NCF3
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Position
D11:complement(59256323..59265161)
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AA seq
974 aa
AA seq
DB search
MGVPTFYRWLADRYPQSIVDVIEEEPREDADGNQIPVDVSKPNPNGLEFDNLYLDMNGII
HPRFHPEGKPAPATYDDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAAAEEERLRKEFEAEGNALSPKERPETCDSNVITPGTSFMAVLSVALQYYIQ
SRLNHNPGWRNTKVILSDANVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIML
SLATHEVHFSILREVIALPGQQDKCFLCGQVGHLAAECRGKPDDETGEWNAVDDTPIHKK
KYQFLNIWMLREYLEYDLEIPNPPFEINFERIVDDFVFICFFVGNDFLPHMPTLEIREGA
INLLMQVYKREFAAMGGYLTDAGEVLLDRVEYFIQSVSVHEDQIFQKRARIQQAIENNEQ
IKLKARGESSKDAQATVVDKIKLGEPGYKERYYVEKFDISNPGEIEEVKKDIVLKYVEGL
CWVCRYYYEGVCSWQWFYPYHYAPFASDLSDLADLEITFFMGEPFKPFDQLMGTLPAASY
KALPEEYGKLMTDPSSPIYNFYPTDFEIDMHGKRFAWQGVVKLPFIDEKKLLSATRKLEA
TLTAEEQIRNSVMLDLLYVHPLHPLASQVISYYQMYHHVRPHERFLWPIDTNASGGMNGF
LWLSERNGWQHVVSSPVKGLPHIEFNQVLNVTYLNPSHHRHIPRLPQGVLVPKKVLTPLD
IKPFPVLWHEDSGGRRQQGRDRELVPGAIIGPQLGEAAHRLVRNTLNIKSKGPSSWSFEQ
PSFNMSSNYTSIRPRPAGPAGYERGFLDDPNHYYSRQPRVTGPLSYGRGYGNGANYYGQH
NHPQGISGNPRHPSSNGMQVKNNYRAQDTLQNQDRYYDLRTGMSALSFEGSARGRAHAEM
SSKMPNSRCLQNLDLLSEQNTGAAPLPPNTWMGKPVNVNPGSRLKQENASSGAYEKQMKK
VYQIKTRPSPVNQQ
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccgacgttttacaggtggcttgcggatcggtacccgcaatcaatcgtcgac
gtaatcgaggaagaaccgagagaagacgcagatggaaatcaaataccagttgatgtctct
aaacctaaccctaacggcctcgaattcgataatctttatctcgatatgaatggaattatt
caccctcgttttcaccccgagggcaagcctgcacctgccacttatgacgatgtatttaaa
tcaatctttgattatattgaccatctcttctcattggttcgtcctagaaagctactctat
atggcaattgatggtgttgcccctagagctaagatgaatcagcaacgaactcgacgtttt
agagcggcaaaagatgctgctgaggcagcagctgaagaggagagattgaggaaagagttt
gaggctgaggggaatgctttgtcccccaaggaaagacctgaaacatgtgactcaaacgtt
attactcctggcacttcatttatggctgtgttgtctgtagctcttcagtattatatacaa
tctaggttgaatcacaatcctggctggcggaatacaaaggttattctttctgatgcaaat
gttcctggtgagggagaacacaagattatgtcatacattcgtttacaacgtaaccttcct
ggcttcaatccaaacacgcgacactgtctgtatggtctggacgcagatttgatcatgttg
tccttagctacacatgaggttcacttttcaattttaagagaggtgattgctcttcctgga
caacaggacaagtgctttctctgtggtcaagtaggtcatttggcagcagagtgtcgtggt
aagccagatgatgaaaccggagaatggaatgctgtggatgatacacctatacacaagaag
aaatatcagtttcttaacatatggatgttgcgagaatatttggaatatgatttagagatc
cccaaccctccatttgagataaactttgaaagaatagtggatgattttgttttcatatgt
ttctttgttggcaatgatttccttccgcatatgccaacattagaaatcagggagggtgct
ataaatcttttgatgcaagtgtataaaagggaatttgcagccatgggtggttatcttact
gatgctggtgaggttttgttagatagagtggagtattttattcaatctgtttctgttcat
gaagaccaaatctttcagaagagggctcgtatacagcaggcaattgagaataatgaacag
ataaagcttaaagcaagaggagagtcctctaaggatgcacaggcaactgttgtagataag
attaaattaggggaaccaggatacaaagaaagatattatgttgagaaatttgacatatca
aatcccggggagattgaagaagttaaaaaggacattgttttgaagtatgttgaagggcta
tgctgggtatgccgctattactacgaaggtgtttgctcctggcaatggttttatccatat
cattatgctccatttgcttcagatctttcagatctagctgatttggaaataacatttttc
atgggagagccatttaaaccctttgaccagctcatgggaacactgccagctgccagttat
aaagctttgcctgaagaatatgggaaactgatgactgatccatcatcacctatctataat
ttctatcccaccgattttgagattgacatgcatggaaaacgctttgcatggcagggtgtt
gtcaaattgccattcattgatgagaagaagttgctttctgcaacaagaaagcttgaagct
actttaacggctgaagagcagattcggaacagtgtgatgcttgatctgctatatgtccat
ccccttcatcctttggcttctcaagtgatttcgtattatcaaatgtaccatcatgttcgc
ccccatgaaagattcttatggccaatcgacacaaatgctagtggtggaatgaatggattt
ctttggttatctgaaaggaatggttggcaacatgtagtctcttcccctgtcaagggtttg
ccgcatatagaatttaaccaagtgttgaatgttacatatcttaatccttcacaccataga
cacattccaagacttccacagggtgttttggtacccaaaaaggttctaacaccattggac
atcaaaccttttcctgtattatggcatgaagacagtggtggccggcgccagcaaggcaga
gatcgggaactggtacctggtgcaatcattgggcctcagctaggagaggcagcacatcgt
cttgtcaggaatactcttaatattaaatcaaaggggccatcctcttggtcgttcgagcaa
ccatcttttaatatgtcaagcaactacaccagcattagaccaagacctgctggaccagca
ggttatgaaaggggctttcttgatgacccaaaccattattatagcaggcagccacgtgtg
actggaccattaagttatggaaggggatacggtaatggcgcaaattactatggtcaacac
aaccatcctcaaggtatatcgggtaacccaagacatccatcatccaatggtatgcaagtc
aaaaacaactacagggcacaggatacattacagaatcaggaccgttattatgatttgagg
actggaatgtctgctttgtcttttgagggaagtgccagaggtagagcacatgcagagatg
tcttcgaaaatgccaaattctaggtgcctgcaaaatctagatctcctgtctgagcagaac
acgggtgctgctcccctaccacccaacacatggatgggtaaaccagttaatgtaaaccct
ggaagtcgcttaaaacaagaaaacgcatcaagtggagcttatgagaagcagatgaagaag
gtttatcagattaagactcgtccatctcctgtaaatcagcagtga
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