KEGG   Gossypium hirsutum (upland cotton): 107950784
Entry
107950784         CDS       T04793                                 
Name
(RefSeq) sm-like protein LSM3A
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107950784
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107950784
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107950784
   03041 Spliceosome [BR:ghi03041]
    107950784
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107950784
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107950784
Spliceosome [BR:ghi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107950784
 Complex C
  U2 snRNP components
    107950784
SSDB
Motif
Pfam: LSM Glutaredoxin TIG_SUH
Other DBs
NCBI-GeneID: 107950784
NCBI-ProteinID: XP_016741231
UniProt: A0A1U8NQG9
LinkDB
Position
D03:complement(15538510..15541183)
AA seq 97 aa
MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVWTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq 294 nt   +upstreamnt  +downstreamnt
atggccaccgaggaagacagcgcggtgaaggagcccttggatctgataaggcttagcctc
gacgagcgtatttacgtcaagctccgttccgaccgtgagctccgtggcaagctccatgca
tatgatcagcatttgaatatgattctgggggatgttgaagagattgttacaacagttgaa
atagatgatgaaacctatgaagagattgtttggactacgaggcgtacagttccattcctc
tttgttagaggagatggagtcatactggtttctccacctctacgcactgcttga

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