Gossypium hirsutum (upland cotton): 107950784
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Entry
107950784 CDS
T04793
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107950784
09123 Folding, sorting and degradation
03018 RNA degradation
107950784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107950784
03041 Spliceosome [BR:
ghi03041
]
107950784
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107950784
mRNA degradation factors
5'-3' decay
Lsm complex
107950784
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107950784
Complex C
U2 snRNP components
107950784
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Glutaredoxin
TIG_SUH
Motif
Other DBs
NCBI-GeneID:
107950784
NCBI-ProteinID:
XP_016741231
UniProt:
A0A1U8NQG9
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All DBs
Position
D03:complement(15538510..15541183)
Genome browser
AA seq
97 aa
AA seq
DB search
MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVWTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgaggaagacagcgcggtgaaggagcccttggatctgataaggcttagcctc
gacgagcgtatttacgtcaagctccgttccgaccgtgagctccgtggcaagctccatgca
tatgatcagcatttgaatatgattctgggggatgttgaagagattgttacaacagttgaa
atagatgatgaaacctatgaagagattgtttggactacgaggcgtacagttccattcctc
tttgttagaggagatggagtcatactggtttctccacctctacgcactgcttga
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