Gossypium hirsutum (upland cotton): 107953017
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Entry
107953017 CDS
T04793
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
KO
K12126
phytochrome-interacting factor 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107953017
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107953017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107953017
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
107953017
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
107953017
NCBI-ProteinID:
XP_016743732
UniProt:
A0A1U8NXP4
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Position
A07:28223685..28227394
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AA seq
473 aa
AA seq
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MTSDLPNGPFMRDPDFMELVWENGQVLIRGLSSKVTQKSFPFSSRSTANGSKDGGVADST
FAHPISGLSSLSKLDRHGVDANIVPVNNFNRLKPSYVPNQLVEDEVPCSSLQQFKGSKEE
KDRVNFSILRSNHASSGAMRTPGLAAGAEDLQGNNVRSAPPRSSNIPFGNEGDFMAKRMR
PTLPDSEPLKESFPDEQSEAVPNARLAPDDTAFKGNPDQMVASSSLCSRGASNCPTYTLK
RRYEDTDLSKNTTMEEAEGTTKAAPVPRGSKGAKRKRKTEVHNLSERRRRDKINKKMRAL
KELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSIGNGVYMPPMMVPLPSAMQHINAQHL
GGYSPMALGMGMRTQMGLGCGAPPQFPTSLMTGAPAVPGNPEARLIMLGFPDQMLLRSMS
HSPFLSSAASFTLQSFQPPAAVVSQSAAPPAAQVDLLGGANPLSTPKDSYPTH
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgacatccgacttgcctaatggacctttcatgcgcgatcctgatttcatggagctggta
tgggaaaatggtcaagttctcattcgaggtttatcgtccaaggtaactcaaaagagtttc
ccgttctcatcgcgttctactgcgaatggatcaaaggatgggggggttgcagattccacc
ttcgcccatcccatatcaggtctctccagtctctcaaaactggatcgtcatggcgtggat
gctaatattgttccagtaaacaacttcaatcgtttaaaaccaagctacgtgcccaatcaa
cttgtagaagacgaggtaccttgctcttccttgcagcagtttaagggatcaaaggaggaa
aaagatagggtgaacttttccatcttaagatcaaaccatgcaagctctggtgcaatgcgc
actccaggattagctgcaggtgctgaggatttacaaggcaataatgtcagatctgcgcct
ccaaggagtagcaatattcccttcggaaatgaaggtgatttcatggcgaagcgaatgagg
ccaacgttaccagattctgagcctctaaaagaatcattccctgacgagcaatccgaagct
gttccaaatgcgagattagcgccggatgatacagcttttaagggaaatccagaccaaatg
gtggcatcgtcttcattatgttcccgtggggcttcaaattgtcccacgtacactttgaaa
aggagatatgaagacactgatctcagtaaaaatacaacaatggaagaagccgaaggaaca
acaaaagcagcgccagttccacggggaagcaaaggtgctaagagaaagagaaaaacagaa
gttcacaacctatctgaacggaggcgaagagataaaatcaacaagaagatgcgtgcattg
aaagagcttatacccaactgtaataaggtggataaagcttcgatgcttgatgaagcaatc
gagtatttaaagacccttcagcttcaagttcagatgatgtcaataggaaatggagtatat
atgccaccgatgatggtccctttgccttcggcaatgcaacatataaacgcacagcatttg
ggtgggtattctcccatggcacttgggatgggtatgagaacgcaaatgggtcttgggtgc
ggcgccccaccacagttcccaacttcactaatgacaggagccccagctgtgcctgggaat
ccggaagctagactcatcatgcttgggttccctgatcagatgttactaaggtccatgtca
cattcaccttttttatcttcggctgctagtttcaccctacagtcgttccagccacctgcg
gctgtggtttcgcaatctgctgctcctcctgcggcgcaagtggatcttctaggtggtgct
aatccactttcgacacctaaggattcatatccaacacattaa
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