Gossypium hirsutum (upland cotton): 107955422
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Entry
107955422 CDS
T04793
Name
(RefSeq) transcription factor PIF3-like isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107955422
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107955422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107955422
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
107955422
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
107955422
NCBI-ProteinID:
XP_040935887
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Position
A11:113741134..113745172
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AA seq
710 aa
AA seq
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MPLSELYRMARGKLDSSQDKNPSSSTDPSIVPEDDFVELVWENGQISMQGQSSIARKVPV
CNSLQSHSFKIGDKYIGNGGNSSKMGKFGVVNAVSSEVPMSAPSHDDDVVPWLKYSENEC
CDMLPGLSGLCTNNIPTDSSLASFNQRRQSISDSFSGSLNAAADFKQGKLAKVPKPADDE
ARLRSGTSESPQLCQVSSSYLGSRNLESIGNKPSHAFFRDTMGVQPSDETLRCVKMQKQD
KVAPCNNTVLMNFSHFSRPAALVKASLQNIGAMARIESKETGFAASTRGPVGSKAIDSNI
KLQKETFSRCHSSIVPMKTDIKQSEAKSLDEPVAAEPNNANCEEYVPKSDKISSQVIGEN
ASNFLPESGKAVESVLAASVCCENSVERASDDPVVNNLKRKNHDNEEFECPSEDAEEESV
GVKKAVPARGGKGFKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEA
IEYLKTLQLQVQIMSMRAGLYVPPMMLPTGMQHMHATQMAYFSSMGFGMGLGMGFGMPFP
ETNTVASACPMVQVPPVCGAPFSSPGPHLSGSTAFHEMPGANLRLYGLHGQGLPMSVPGA
PLFPIPGGHLMKSAIGLSACGLGGPMDNMDSATASSSKDLIQNINSQVAQNTNINSSMNQ
TSTQYRTANESFQQPAEVQENGRASEITGSVPFRSTDGDKKLPDSVGYNC
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcctctatccgagctatatcggatggctagggggaagctcgattcatctcaagacaag
aacccttcaagttcaactgatccatctattgtacctgaggatgattttgttgaactggtt
tgggagaatggtcaaatttcgatgcaaggtcagtctagtatagctagaaaggttcctgtt
tgtaacagcttacaatcccacagttttaagattggagataaatatataggcaatggagga
aatagttcaaaaatgggaaagtttggggtggtgaatgcggtatcgagtgaagttccaatg
tcggctccgtctcatgatgatgatgtggtgccttggttaaagtactcagagaatgaatgt
tgtgatatgttgcctggattatctgggctctgtacaaataacatcccaactgatagtagc
ttagcttcatttaatcaaagacgccaatccatcagtgattccttttctggttctctaaat
gctgctgcggatttcaaacaaggaaagttggcaaaggttcctaaaccggcagatgacgaa
gctaggctgagaagtggtaccagtgagtcgccacaactatgtcaagtgtcttcatcgtat
cttggatcaagaaatttggagagtattggtaataagccgagccatgcctttttcagagat
acgatgggagttcaaccgtcagatgagactttgcgttgtgttaagatgcagaaacaagat
aaagttgcaccttgtaataatactgtcttgatgaatttttcccatttttcacgtcctgct
gctcttgttaaagctagtcttcagaatataggtgctatggctaggattgagagtaaggaa
acagggtttgcagccagtactagggggcctgttggttccaaggccattgattcaaatatc
aagttacagaaggaaaccttttcacgttgccattcttcaatagtgccgatgaagactgat
ataaaacaatctgaagctaagtctctagatgagccagttgctgctgaaccaaataatgcc
aactgtgaagaatatgtcccgaaaagtgataaaatatctagtcaagttattggtgaaaat
gcttccaatttcctgccagagagtggtaaggctgtagagtctgtgcttgctgcttctgtt
tgctgtgaaaatagtgtagaaagagcttctgacgatccagtagtaaataatttgaagaga
aaaaaccatgataatgaggagtttgaatgtcctagcgaagatgctgaagaagaatctgta
ggtgtgaaaaaagcagttcctgctcgaggaggtaaggggttcaagagaagccgagcagct
gaagtgcataatttatctgaaaggaggcgaagggataggataaatgagaagatgcgtgct
ttacaggagctcatacctaactgcaataaggtggacaaagcttcaatgcttgatgaagca
attgaatatcttaagacgctccaactacaagtgcagattatgtctatgcgagctggctta
tatgtgccaccgatgatgttgccaactggaatgcaacacatgcatgccactcaaatggcg
tatttttcatccatgggttttggaatgggtctaggtatgggttttgggatgccatttcct
gaaacgaatactgtagcttctgcttgccctatggttcaggtgcctccagtctgtggagca
cctttttctagcccaggccctcatttgtcaggttcgactgcattccatgagatgccagga
gctaacctccggctatatggtcttcatggtcaaggacttccaatgtcggtgccaggtgca
cctttgtttcctattcctggtgggcacctcatgaaatcagccattggattgagtgcctgt
ggactgggaggtcctatggacaatatggattcagctacagcttctagttcaaaggaccta
attcagaatatcaactcacaagtggcacagaatactaacatcaatagctcaatgaatcag
acatctactcagtaccgaacagcaaatgaaagttttcaacagccagctgaagtgcaagag
aatggtcgagcctcggaaatcactggtagtgtaccttttagatcaactgatggagataag
aagttacctgatagtgtaggttataattgttag
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