Gossypium hirsutum (upland cotton): 107958639
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Entry
107958639 CDS
T04793
Name
(RefSeq) ABC transporter I family member 21
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107958639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107958639
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107958639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
AAA_5
SMC_N
AAA_25
AAA
NACHT
AAA_15
AAA_23
AAA_30
SRP54
Arf
ATP-synt_ab
AAA_22
AAA_18
PduV-EutP
AAA_24
AAA_33
Zeta_toxin
AAA_16
Pox_F17
Motif
Other DBs
NCBI-GeneID:
107958639
NCBI-ProteinID:
XP_016749951
UniProt:
A0A1U8PFF5
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All DBs
Position
D07:56407593..56409902
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AA seq
300 aa
AA seq
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MAEQACCRSGEGKENGGDSQGITVCDMQFAYELQHPLFFDFNLDIARGSRCLLVGANGSG
KTTLLKILAGKHMVGGREVVRVLNRSAFHDTQLVCGGDLAYLGGSWSKTIGSAGEVPLQG
DFSAEHMIFGVEGIDPVRRDKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLQPFQVLLL
DEVTVDLDVVARMDLLDFFKEECEQRGATVVYATHIFDGLETWATHLAYIQDGQLKRSAK
LTEINELKSSENLLSVVEAWLRSETKCEKKKPSNSPAQVQKSSPFGTSPFMSSRHMAYYR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaagcttgttgccgatcaggagaaggaaaggaaaatggaggagactcgcaa
ggcatcaccgtatgcgacatgcaattcgcctacgaattgcagcatccgcttttcttcgat
ttcaatcttgacatcgctcgtggatctcgttgccttctcgtcggcgccaacggatctggg
aagacgacattgttgaaaattttagcaggaaaacatatggtgggtggaagagaagtcgtg
agagtactaaaccgttcggcttttcacgatactcaacttgtttgtggtggtgatttagct
tatttgggaggatcttggagtaaaactattggctctgctggagaggttccattgcaggga
gacttctcagcggaacacatgatatttggagttgaagggattgatcctgtaaggagagat
aaattgattgagttgcttgatattgatttgcaatggagaatgcataaggtatctgatgga
caacgacgtcgagtccaaatttgcatgggtcttcttcaaccttttcaggttcttttgcta
gatgaggtcaccgtggaccttgacgttgttgcgaggatggatttacttgatttctttaag
gaagaatgtgagcagagaggagccacagtcgtatacgctacccatatttttgatggtttg
gagacatgggcaacacatttggcttacatccaagatggtcaattgaagagatctgcgaag
ttaacagaaattaatgagttgaaaagctcagaaaatttgctctctgttgttgaagcctgg
cttcgctctgaaaccaagtgcgagaaaaagaaaccgtccaattcccctgcccaagtccag
aagtcctcgccttttggtacttctcctttcatgtcgtcgaggcacatggcatactaccgt
tga
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