KEGG   Gossypium hirsutum (upland cotton): 107962291
Entry
107962291         CDS       T04793                                 
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107962291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107962291
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 related factors
    107962291
 Complex B
    107962291
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    107962291
SSDB
Motif
Pfam: SMN_Tudor TUDOR CHASE3 Agenet PLipase_C_C RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 107962291
NCBI-ProteinID: XP_016754098
UniProt: A0A1U8PUQ5
LinkDB
Position
A06:complement(70789834..70796713)
AA seq 291 aa
MQGTDELSIHDLASSLSTYKEQLQQVRQLLADDPGNAEYVDMEKELAEVIALTEELLATA
KQNEISGSDIGTSVSAAAAQSKEMVKPSDYKDKFPVGTKVQAVWSEDGEWYDATVEAVTP
NGYYVSFDGWGNKEEVDPANVRAIEYNALLEAEKVAEATKQAIKRKIAQAASVDFQSRSL
PAKLRITSDDPEDVKAAKRKKIHAFKSKMRHEQLEVAQNKRQNAWQQFQTTKGKTKKVGF
FSGRKRESIFKSPDDPQGKVGVTGSGKGLTDFQKREKHLHLKGGNVEISDD
NT seq 876 nt   +upstreamnt  +downstreamnt
atgcaaggaacagatgagctaagcatacatgacctggcttcaagtctctctacgtataag
gaacagcttcagcaggttagacagcttctggctgatgatcctggaaacgctgaatatgtg
gacatggaaaaggagctcgctgaggtgattgctctgacagaggaactgcttgcaactgcg
aagcaaaatgagatttctggatcagatattgggactagtgtcagtgcagctgctgcacaa
tcgaaggaaatggtgaaaccatcagattataaagataaatttcctgttggcacaaaagtt
caggctgtctggagtgaagatggagagtggtatgatgcaactgttgaggctgttactcca
aatggttattatgtgtcatttgatggatggggaaacaaggaagaggtggatcctgccaat
gtaagggcgattgaatacaatgctttgctagaagctgagaaggttgctgaagccacaaaa
caagctattaaacggaagattgctcaagctgcttctgttgactttcaatctcgaagttta
ccagcaaagcttcgaatcacttctgatgaccctgaggatgtgaaagctgccaaacggaag
aagatacatgctttcaagtcaaagatgcgacatgaacaacttgaagtggcacaaaataag
cggcagaatgcttggcagcagtttcagacaaccaaaggcaagactaaaaaggttggtttt
ttctcggggcgtaagcgtgagagcattttcaaatcaccggatgatcctcaaggtaaggtt
ggtgtgacagggagtggaaagggcttgacagatttccagaaaagagaaaagcacttgcat
cttaagggaggtaacgttgagataagtgatgactag

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