Guyparkeria halophila: GM160_00495
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Entry
GM160_00495 CDS
T06369
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ghl
Guyparkeria halophila
Pathway
ghl03030
DNA replication
ghl03410
Base excision repair
ghl03420
Nucleotide excision repair
ghl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GM160_00495 (ligA)
03410 Base excision repair
GM160_00495 (ligA)
03420 Nucleotide excision repair
GM160_00495 (ligA)
03430 Mismatch repair
GM160_00495 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghl03032
]
GM160_00495 (ligA)
03400 DNA repair and recombination proteins [BR:
ghl03400
]
GM160_00495 (ligA)
Enzymes [BR:
ghl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GM160_00495 (ligA)
DNA replication proteins [BR:
ghl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GM160_00495 (ligA)
DNA repair and recombination proteins [BR:
ghl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GM160_00495 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GM160_00495 (ligA)
MMR (mismatch excision repair)
DNA ligase
GM160_00495 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GM160_00495 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
RNA_pol_A_CTD
Zn_Ribbon_TF
AphA_like
Motif
Other DBs
NCBI-ProteinID:
QGT77480
UniProt:
A0A6I6CW26
LinkDB
All DBs
Position
111485..113518
Genome browser
AA seq
677 aa
AA seq
DB search
MSEADDRKRLAALRAEINQHNFRYYVLDRPTVPDAEYDALMRELEAIEAKHPDWITPDSP
TQTVGAPPSHVFETVEHQVPMLSLDNAFDADEFTAFDRRVRERLGRDEPITYLAEPKFDG
LAISLTYEGGVLARAATRGDGRRGEDVTDNVRTIETVPYSIDLPVDSRIEIRGEVVMTHE
SFAEINRRAERRGEKVFANPRNAAAGSLRQKDPKVTASRPLHFFAYGIGAAEGIEAPETQ
SGWLDWFERLGFVVAEHRDRVEGLEAAQAFHASLGEKRAGLAFDIDGVVFKVDSLADQQR
LGFVARAPRWAIAWKFPAEEKLTQVRDVEFQVGRTGALTPVARVEPVAVGGVTVANVTLH
NMDEIERKDVRVGDWVRVRRAGDVIPEIIEVLPEKRPPDARKIELPDSCPECGSEVLRDE
EQAVARCTGGLFCPAQRREAIRHFASRKAMDIDGLGEKWITLFLERELVEHVDDLFRLNR
DDLVALPRMGAKSADNLLDSLEKAKETTLGRFLYALGIREVGEVTAESLARHFRDLDALM
AASEEELQTVEDVGPVVARHVRAFFQQPHNREVIDGLLAAGIHWPTPEGPADDAPLAGKT
FVITGTLPDMTRDEASDRLTALGAKVTGSVSKKTTALVAGEAGGSKLDKAEKLGVPVLDA
EAFARLLENPSTLDTDR
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggccgacgatcgcaagcgccttgcggccctgcgcgccgagatcaaccagcac
aacttccgctactacgtcctcgatcgccccacggtgccggacgccgagtacgacgccctg
atgcgcgagctcgaggcgatcgaggcaaaacatcccgactggatcacccccgactcgccc
acccagacggtgggcgccccgccgagccatgtcttcgagaccgtcgagcaccaggtgccg
atgctctcgctcgacaacgccttcgatgccgacgagttcaccgccttcgaccgccgcgtg
cgcgagcgcctgggccgcgacgagccgatcacctatctggccgagcccaagttcgacggc
ctggccatcagcctgacctacgagggcggcgtgctcgcccgggcggcgacccgtggcgac
gggcgacgtggtgaggacgtcaccgacaacgtccgcaccatcgagaccgtgccgtattcg
atcgacctgccggtcgacagccgcatcgagatccgcggcgaggtggtgatgacccacgag
tcgtttgccgagatcaaccggcgcgccgaacgacgcggcgagaaggtattcgccaacccg
cgcaacgccgcggccggctcgttgcgccagaaggaccccaaggtcacggccagccggccg
ctgcacttctttgcctacggcattggtgcggccgagggcatcgaggcgcccgagacccag
tcgggctggctcgactggttcgaacggctggggtttgtcgtcgcggaacaccgtgatcga
gtcgaggggctggaggccgcacaagccttccacgcgtcgctgggcgagaagcgtgcgggg
ctggccttcgatatcgacggcgtggtcttcaaggtggattcgctggccgaccagcagcgg
ttggggttcgtcgcccgcgcgccgcgctgggcgatcgcctggaagttcccggccgaggaa
aagctcacccaggtgcgcgacgtcgagttccaggtggggcgcacgggcgcactgaccccg
gtcgcccgcgtcgaaccggtggcggtgggcggggtgaccgtcgccaatgtcaccctgcac
aacatggacgagatcgagcgcaaggacgtgcgcgtcggcgactgggtgcgcgtgcgtcgc
gccggtgacgtgatccccgagatcatcgaggtgttgcccgagaagcgcccccccgatgcc
cgaaagatcgagcttcccgacagctgcccggagtgcggctccgaggtgctgcgcgacgag
gagcaggcggtcgcgcgctgcaccggtgggctgttctgccccgcgcaacgccgcgaggcg
attcgccacttcgccagtcgcaaggcgatggacatcgacggcctgggcgagaagtggatc
accctgtttctcgagcgcgagctggtcgaacacgtcgacgacctgttccgcctgaatcgg
gacgacctggtcgccttgccgcgcatgggggcgaaatccgccgacaacctgctcgactcg
ctggaaaaggccaaggagaccaccctggggcgtttcctctacgcgttgggtatccgcgag
gtgggcgaggtgaccgccgagtcgctcgcccgccatttccgcgacctcgacgcgctgatg
gcggcctccgaggaagagctgcagacggtcgaggacgtcggtccggtggtcgcccgccac
gtgcgcgccttcttccagcagccgcacaaccgcgaggtgatcgacgggctgctggccgcc
ggcatccactggcccacgcccgaggggccggccgacgatgcgccgctggcgggcaagacc
ttcgtgatcaccggcaccttgccggacatgacccgcgacgaggcctcggatcgactgacc
gcgctcggggccaaggtcaccggttcggtatcgaagaagaccaccgccctggtcgccggc
gaggccggcggcagcaagctcgacaaggccgagaagctcggcgtgccggtgctcgatgcc
gaggccttcgcccgtttgctggagaatccctccacactcgacacggaccgctga
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