Gaoshiqia hydrogeniformans: ACOIT5_00980
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Entry
ACOIT5_00980 CDS
T11085
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ghy Gaoshiqia hydrogeniformans
Pathway
ghy03030
DNA replication
ghy03410
Base excision repair
ghy03420
Nucleotide excision repair
ghy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACOIT5_00980 (ligA)
03410 Base excision repair
ACOIT5_00980 (ligA)
03420 Nucleotide excision repair
ACOIT5_00980 (ligA)
03430 Mismatch repair
ACOIT5_00980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghy03032
]
ACOIT5_00980 (ligA)
03400 DNA repair and recombination proteins [BR:
ghy03400
]
ACOIT5_00980 (ligA)
Enzymes [BR:
ghy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACOIT5_00980 (ligA)
DNA replication proteins [BR:
ghy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACOIT5_00980 (ligA)
DNA repair and recombination proteins [BR:
ghy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACOIT5_00980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACOIT5_00980 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACOIT5_00980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACOIT5_00980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
BRCT_2
PTCB-BRCT
HHH_3
Auto_anti-p27
Zn_Ribbon_TF
Zn_ribbon_Top1
RNA_ligase
Zn_ribbon_TFIIB
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
XQW73382
LinkDB
All DBs
Position
214656..216662
Genome browser
AA seq
668 aa
AA seq
DB search
MDKELAKQQIDKLRKELEIFNYQYYVLSQPTVSDYEFDMKLKELETLEAEHPEFFDPNSP
SQRIGSDINQEFVQVKHQYPMLSLSNSYSEGELVDFDQRIKKLINEPYEFVCELKFDGTS
ISLSYENGQLVRAVTRGDGEKGDDVTANVRTIRSIPLKLTGNDFPAKFEIRGEVLLPFAV
FAELNQAREENGETPFANPRNAASGTLKMQNSAEVAKRRLDAYFYYLLGENLPDDGHFET
LGHAQRWGFKISDHTRRCANIQEVINFIREWDTERFKLPVATDGIVIKVNSRRLQNNLGF
TAKSPRWAIAYKFKAEQVSTTLESVSFQVGRTGAVTPVANLTPVLLAGTVVKRASLHNAD
IINKLDLHLNDVVFVEKGGEIIPKIVDVNDSLRHPLAQKVEFITHCPECGSALVRREGEA
AHYCPNETGCPPQIKGKIEHFISRKAMNIDGLGQETIELLYNQGLIRHSADLYDLTADQL
IPLERMGEKSAERILKSLEESKNVPFERVLFALGIRFVGETVAKKLAQKLVHIDRIRSAS
LEELTNIDEIGGKIAESVLAYFQEESNIKTIRRLQEKGLQLELDQSIVTKRSNKLEGLSI
VISGTFENYSRDELKELIEKNGGKNVGSISKNTSYLLGGSNIGPAKLEKVEKLGIPVISE
DDFLKMIE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggaattggcaaaacaacaaattgataaactcagaaaagagctggaaatattt
aattaccagtattatgtgctttcgcagcccaccgtcagcgattacgagttcgacatgaag
ctgaaggaattggaaacactggaagctgaacacccggagtttttcgatcccaattcgcca
tcgcaacggatcggcagcgacatcaaccaggagtttgtgcaggtgaaacaccaatacccc
atgctatcgctctcgaacagttactctgagggcgaactggttgattttgaccaacggatc
aaaaagctgattaacgagccttacgagtttgtctgcgaactgaaattcgacgggacttca
atcagcctgagctacgaaaacggccaactggtgcgggctgtaacccgcggcgacggcgaa
aagggcgacgatgtcacggccaatgtccgaaccattcggagtattccgctcaaactgacc
gggaatgattttccggcgaaatttgaaatccggggcgaagtgttgttaccctttgctgta
tttgccgaactcaaccaggcccgcgaagaaaacggggaaacgccttttgccaatccgcgc
aatgcggcatcgggaacactgaaaatgcaaaattcggccgaagtggccaaacgccggctc
gacgcttatttttattacctgctgggcgaaaacctacccgacgacgggcatttcgaaacc
ctcggccatgcgcagcgctggggcttcaaaatatcggaccacacccggagatgtgccaac
attcaggaggtgatcaattttatccgcgagtgggacaccgaacggtttaaactacctgta
gccaccgacggcattgttatcaaagtaaattccaggcgtttgcagaacaacctgggattc
acggctaaatcgccgcgctgggccatcgcctataaatttaaagccgagcaggtaagcacc
acgctcgaatcggtcagcttccaggtggggcgtaccggcgccgtaaccccggtagccaac
ctcactcccgtactcctggccggaactgtcgtaaaacgggcctcgttgcataacgccgac
atcatcaacaaactggatttacacctcaacgatgtggttttcgtggaaaaaggaggagaa
atcattcccaaaattgtcgatgtaaacgactccttacggcatccgctggcgcaaaaagtc
gaatttatcacgcattgccccgaatgcggatcggcattggtccgccgcgaaggcgaagcc
gcccactactgcccgaacgaaaccggctgtcccccgcaaatcaaaggcaaaatcgaacat
tttatcagccgtaaggcaatgaatatcgatggtttgggacaagaaaccatcgagttgctt
tataaccaggggctgatccgtcacagcgccgatttgtacgacctcacggccgatcaactc
attccgttggaacgaatgggcgaaaaatcggccgaacgcatcctgaaaagtcttgaagaa
tcgaaaaacgtaccttttgagcgggttttgttcgcgttaggcatccgcttcgtgggcgaa
acggtagccaagaaactggcacaaaagctggttcatatcgaccggatcaggtcggccagc
ctcgaagaactgaccaatattgatgaaatcggaggcaaaattgccgaaagcgtactggcc
tattttcaagaggaaagcaatatcaaaacaatcaggcgtttacaggaaaaaggtctacag
ttagaacttgatcaatcgattgtaaccaaacggagcaacaagctggaaggactaagtatt
gttatttccggaacattcgagaactattcgcgcgacgaactgaaagaactgattgaaaaa
aacgggggaaagaatgtcggttcaatctcaaaaaacacctcctacttgttggggggaagc
aatatcggccccgcgaagctcgaaaaagttgagaaattaggtattccggtcatctctgaa
gatgattttctaaaaatgatagaataa
DBGET
integrated database retrieval system
