Gilvimarinus sp. DA14: NHM04_02480
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Entry
NHM04_02480 CDS
T08272
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gil
Gilvimarinus sp. DA14
Pathway
gil03030
DNA replication
gil03410
Base excision repair
gil03420
Nucleotide excision repair
gil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NHM04_02480 (ligA)
03410 Base excision repair
NHM04_02480 (ligA)
03420 Nucleotide excision repair
NHM04_02480 (ligA)
03430 Mismatch repair
NHM04_02480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gil03032
]
NHM04_02480 (ligA)
03400 DNA repair and recombination proteins [BR:
gil03400
]
NHM04_02480 (ligA)
Enzymes [BR:
gil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NHM04_02480 (ligA)
DNA replication proteins [BR:
gil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NHM04_02480 (ligA)
DNA repair and recombination proteins [BR:
gil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NHM04_02480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHM04_02480 (ligA)
MMR (mismatch excision repair)
DNA ligase
NHM04_02480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NHM04_02480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UTF60687
UniProt:
A0A9J7AD87
LinkDB
All DBs
Position
complement(605861..607915)
Genome browser
AA seq
684 aa
AA seq
DB search
MSQDSVSPKVRSRVQQLREQIDDHNYRYYALDEPSIPDAEYDRLLSELKGLEQQYPELAS
ADSPTQRVGTAPLDSFVSVRHEMPMLSLDNAFSDDDLRAFDQRLKDRLKATADIEYACEP
KLDGIAISILYEQGKLVRAATRGDGTNGEDITENVRTIRSVPLQLRGDNFPARLEVRGEI
YMPSDGFAALNKRAAEAGEKVFVNPRNAAAGSLRQLDSRITAKRPLELCAYSVGVHQGME
LPPRHTDILHLLNQWGFKINREMIAARSIEQCIEYHRQLGEKRASLSYEIDGVVFKVNDI
ATQEKLGFVSRAPRWAIAFKFPAQEEMTELQAVEFQVGRTGTITPVARLKPVFVGGVTVS
NATLHNRDEIARLDARVGDTVIVRRAGDVIPQIVGVVQERRPADAQLIEFPERCPICDSP
AVQVPGEAAIRCEGGLICPAQRKEAIIHFASRKAMDVDGLGDKLVEQLVDKGLITTVADL
FTLEAQAVAELERMGPKSAENLIAALEKSKQVSFERFIYALGIREVGEATARNLADHFGT
LQALSEADEQALQEVDDIGPVVARFVRDFFIEPENLDIIQRLQALGVHWPEKSAASPDAS
AAAAQQPLAGQTCVLTGTLEAMTRDEAGDKLRALGAKVAGSVSKKTAFVVAGPGAGSKLA
KAEQLGVEVLDEAALLQLLDKYGA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcaagactctgtttccccgaaagtgcgcagccgtgtgcagcagctgcgcgagcaa
atcgacgaccacaactaccgttactacgcccttgatgaacccagcattcccgatgctgaa
tacgaccggctgttaagcgagctaaagggtttagagcagcaataccccgaactggccagc
gccgactcgcccacccagcgtgtgggcactgcgcccctggacagcttcgtctctgtgcgc
catgaaatgcccatgctgtcgctggataatgcctttagcgacgatgaccttagggcattt
gatcagcggcttaaagatcggctaaaagcaaccgccgatatcgaatacgcctgcgagcct
aaactcgacggtattgccatcagcattctctatgagcagggcaagctggtgcgtgcggcc
acccgtggcgatggcaccaatggtgaagacattaccgaaaatgtacgcaccattcgctcg
gtaccactgcaactgcgcggcgataactttcccgcgcggctggaagtgcgcggtgaaatt
tacatgcccagcgatggctttgcggcgttaaataagcgcgccgccgaggcgggcgaaaag
gtgtttgttaacccgcgcaatgccgccgctggcagcttgcgccaattggattcacgcatt
acggcaaaacgcccgttagagctatgcgcctacagcgtaggcgtgcatcaggggatggag
ctgccgccccggcacacggatattctgcatctgctgaatcaatggggttttaaaatcaat
cgtgaaatgattgccgcccgttcgattgagcagtgcatcgagtaccatcgtcaactgggc
gaaaagcgcgcctcactcagctacgaaattgatggcgtggtgttcaaagtcaacgatatc
gccacccaggaaaagctcggttttgtctcgcgcgcgccgcgttgggctatcgcctttaag
tttcccgcgcaggaagagatgaccgagctacaagcggtggaatttcaggtgggacgcacg
ggtactatcaccccggtagcgcgcttaaagcccgtgtttgtgggcggcgtcaccgtttcc
aatgccaccctacacaaccgcgatgaaattgcccgtttggatgcgcgggttggcgatacg
gttattgtgcgccgtgctggcgatgttattccgcaaattgtcggcgtggtgcaagagcgc
cgcccggccgacgcacaacttattgaatttcccgagcgctgccccatatgcgactcaccg
gcggtgcaagtgccgggcgaagcggcgattcgctgcgagggcggccttatttgcccggcc
cagcgcaaagaggcgatcattcactttgcctcccgtaaagccatggatgtagatggcctg
ggcgataagctggtggagcagctggtcgataagggcttgattaccacggtagctgatctc
tttaccctagaggcgcaagccgtcgccgagcttgagcgcatgggccccaagtcggccgag
aacttaatcgccgcgctggaaaaatccaaacaggtcagcttcgagcgttttatctacgcc
ctgggtattcgcgaagtgggcgaggccaccgcgcgcaatttggcggatcacttcggcacc
ttacaggcgctcagcgaagccgacgaacaggcattgcaagaggtcgatgatatcggcccg
gtagtggcgcgttttgtgcgcgacttttttattgagcccgagaacttggatatcattcaa
aggctacaagcgctaggcgtgcactggcccgaaaagtccgccgctagcccggatgcgtca
gccgcagcagcgcaacagcctctagcagggcaaacctgcgtactcactggcaccttagag
gccatgacccgcgacgaagcgggggataaactgcgcgccctgggcgccaaggtagcgggc
agtgtgtcgaaaaaaaccgcgtttgtggtggccggcccaggtgcgggctccaagcttgca
aaagccgagcaactgggcgttgaggtgctcgatgaagcagctctgcttcagttgttagac
aaatacggcgcgtaa
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