Gimesia benthica: F1728_30200
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Entry
F1728_30200 CDS
T06296
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gim
Gimesia benthica
Pathway
gim03030
DNA replication
gim03410
Base excision repair
gim03420
Nucleotide excision repair
gim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F1728_30200 (ligA)
03410 Base excision repair
F1728_30200 (ligA)
03420 Nucleotide excision repair
F1728_30200 (ligA)
03430 Mismatch repair
F1728_30200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gim03032
]
F1728_30200 (ligA)
03400 DNA repair and recombination proteins [BR:
gim03400
]
F1728_30200 (ligA)
Enzymes [BR:
gim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F1728_30200 (ligA)
DNA replication proteins [BR:
gim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F1728_30200 (ligA)
DNA repair and recombination proteins [BR:
gim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F1728_30200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F1728_30200 (ligA)
MMR (mismatch excision repair)
DNA ligase
F1728_30200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F1728_30200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Zn_ribbon_Top1
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QGQ26685
UniProt:
A0A6I6AN76
LinkDB
All DBs
Position
7781255..7783264
Genome browser
AA seq
669 aa
AA seq
DB search
MSVQKEIEELRQQLEHHNRLYYIQAKPEISDREFDKMMKRLEQLEEAHPEYDSPDSPTKK
VGGAPIEGFQTIAHRLPMLSIDNIFELDGLKEFETRICKLLGEEQVELTAEYKIDGVAVS
LVYENGHLVQGVTRGDGQSGDDITHNVRTIGGVPLRLNAKKPPALLEIRGEAYISNSDFQ
VLNVEMQEQGKEPFANPRNTTAGGLKLLDPKLCAKRKIRFFAHGIGAVEGVDFQTHVKYL
DAIQEMGIPATPNVKAFPNLEKTMEHAQTMMDDLHSLDFEVDGIVLKVNRFDQRDQLGNT
SKSPRWVVAYKWERYEAVTRAESIVFQVGKTGTVTPVANLEPVQIAGTTVSRASLHNRDE
MQRLGIQIGDWVVVEKAGKIIPHVVRVEEHRRDGSQQELEFPTHCPECNTELVQDEGGVY
IRCPNPECPATVRETLRYYASRQAMDIEGMGIKMIEQLLESGLLKGLADIYRLDEHYEDL
INLERQGEKSIDNLLAGIESSKQQPLWRLLTGLNIRHVGASNARILEREFGTIDEITKQS
EEDLADVNEIGPVIAGSVYNFFHSDFGQKLIADLKEEGLNMGTPVSKQEKPAGALEGKTV
VVTGTLSRFTRDQAKEFIEKHGGKASGSVSSKTDYLVAGENAGSKLTKAQSLEVPVLSED
EFLALLGED
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttcaaaaagaaattgaagagctgcgtcagcagctcgagcatcataaccggctg
tattacattcaggcgaagccggaaatatccgaccgcgaattcgataagatgatgaagcgg
ctggagcagctcgaggaagcacatccggagtatgattcccccgatagccctactaaaaaa
gtgggtggggcaccgatagaggggtttcagacgattgcccatcgtctgccgatgctctcg
atcgacaacatctttgaactggatggtctcaaggaatttgaaacccgcatctgtaaactg
cttggagaagagcaggtcgaactgacggccgagtataaaattgacggtgtcgcagtctcc
ctggtctatgaaaacgggcacctcgtacagggagtgacccgcggcgatggccagtctggg
gatgacatcacccacaacgtccgcaccattggtggagttcctctgcgcctgaatgcaaaa
aagcctcccgcgctgctggaaatccggggagaagcttacatcagcaattctgatttccag
gtgctcaatgtagaaatgcaggagcaggggaaagaaccgtttgccaacccgcgcaacaca
acagcaggcggtttgaaactgctggacccgaaactgtgtgcaaaacgtaaaatccgtttt
tttgcgcacggtatcggagcggttgaaggtgttgattttcagacgcatgtcaaatatctc
gacgcgattcaagaaatgggtatcccggcgacacccaacgttaaggcttttcccaacctg
gaaaagaccatggaacatgcccagaccatgatggatgacctgcactcgctcgactttgag
gttgacgggattgtgcttaaggtcaatcgctttgatcagcgcgatcaactgggcaatacg
tccaagagcccgcggtgggtcgtggcgtataaatgggaacgatatgaagcggtcacccgg
gcagaatcgattgtcttccaggtgggtaaaaccggaacggtgactccggtagctaacctg
gaaccggtccagatcgccgggaccacggtttctcgggccagtctgcacaatcgagatgaa
atgcagcggctggggattcagatcggcgactgggtcgtcgtggaaaaagccggcaaaatc
attccacacgtggtgcgtgtggaagagcatcgccgggatggctctcagcaggaactcgaa
ttccccacgcattgccctgaatgtaatacggaactggttcaggatgaagggggcgtttac
attcgctgtcctaatccggaatgccccgctacggttcgcgagactctccgctattacgct
tcgcgtcaggcgatggatatcgaaggcatgggcatcaagatgatcgagcagttgctggaa
tccggattgcttaagggactggccgacatctatcgtcttgacgaacattacgaagatctg
attaacctcgaacgccagggagaaaagtcgatcgataatctgctggcaggcatcgaaagt
tccaagcagcagccgctctggcggttactcacggggctgaacatcaggcatgtgggggcc
agtaatgcccggattctcgaacgggaattcggaaccatcgacgagattaccaaacagagc
gaggaagacctggcggatgtgaatgagattggtcccgtgatcgctggttctgtgtataac
ttcttccactccgatttcggtcaaaagctgattgcagatcttaaggaagaggggctgaat
atggggacaccggtttccaaacaggaaaagcccgctggtgccctcgaaggtaagaccgtg
gttgtcaccggcactctatcgcgatttacccgtgatcaagctaaggagttcatcgagaaa
cacggaggcaaggcctcgggatcggtatcttcgaaaacggattacctggtagcgggggag
aatgccggtagtaaactgacgaaagcacagtcgttggaagtacccgttctttcggaagat
gaatttctggcgctgctgggtgaggactaa
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integrated database retrieval system
