Gekko japonicus (Schlegel's Japanese gecko): 107112740
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Entry
107112740 CDS
T04299
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain containing 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
gja
Gekko japonicus (Schlegel's Japanese gecko)
Brite
KEGG Orthology (KO) [BR:
gja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gja03036
]
107112740 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
gja03400
]
107112740 (SMCHD1)
Chromosome and associated proteins [BR:
gja03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107112740 (SMCHD1)
DNA repair and recombination proteins [BR:
gja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107112740 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
107112740
NCBI-ProteinID:
XP_015269415
LinkDB
All DBs
Position
Un
AA seq
2018 aa
AA seq
DB search
MAAGRDGASNILTVFVYDRRQDVSDDSEKTLNCHEGSYEGFRSAVCQAFGISSDEAFVIT
TTSRKQITSENFGGIVQDRMTFYLLQSVDQSLPSATKERIDFLPHYDTLVKSGMYEYYAS
EGQNPLPFALAELIDNSLSATSQNTGIRSIQLKLLFDDAQGKPAVAVIDNGRGMTSKQLN
NWAVYRLSKFTRHGDTESDHSGYVRPASVPRSLNSDISYFGVGGKQAAFFVGQSARMISK
PADAQDVHELVLSKEDFENKERNKEAIYSGYIRNRKPSDSSHIVNDDERFLLNVIMEEKN
KESFTTVVITGVQPDHVQYLRNNFYHWTRQLAHIYHYYIHGPKGNENNSPVKELGAFNSI
DIEISMFEKGKIPKTLNLREIKDDMQTLYINTAADSFEFKAQVEGEGVVEGIIRYHPFLY
DKETYPEDPCFPSRLKEEDDDNEDECFLIEKGGRGKRPIFECFWNGRLIPYTTVEVFEWC
GFPKKRGLVPFECYNRISGVLFTNDKFQVSTNKLTFMDLELKLKDKDTLFTRVVNGQEQR
MKIDREFTLWLKDCHEKYDKQIKFTLFKGIITRTDQPSKRMQSPWATYSAIEWDGKTYKT
GQLIKTIKTVRIFHGSIQNFFLYGDHDGDVYATGGEVQIALEPQALYDEKKIIPICKLDR
SASDKAVKKYIEEEMAKLPDKLSVTWPEGDELSPNETRYAGTTIGALRIEIVNKKGEAMQ
KLPGASHGGSKKLLVELKVILHSSDGDKEIISHISQHGGKWPYWFKKMETINKLGSYTLK
LQVVLNESNADTYAGRPLPSKIFKFNIIAGKPQKFSIGLLDPPFCVGIPFSIPLSVQDEF
GHDAYLTDDIVPQLEASGLTLTYEEIDRGPDYVIKGVLAKGLVNNYQGKNFNLKVTLPGL
REETQVLRIKLHPGPPRRLNVRPDSNIFKIENGTPVSFQIEVLDEVGNITAQPKLIVHCK
FSGAPDLPIYSVDCSSGGLNILTGPFLHVKNIKKDQTLKAKIEIPSCKDVPPVEKTIKLL
PSSRVAKLQVFSMEGEKATQIKHQDEISWVAGDVMQNLMFQMYDEIEKEIIITPALAEKI
KVNWTPKISKEQLVKGLLPDVKVPTSVNDVRYCQITFLDDHVSLESAFIVRPLPDEARHI
KCKLKGSNVLQMGEKLQAEIEVMITDQHGNQIQNLASSSVSSLGISGNGLDKTDLKIFWQ
ADTQTFCVKGIRFKPGHPGIKELCFGWHEFSHFLRLNMIAGPPAKLILMDWIDLGESVSV
INGKELPKPLIVQLCDQWDNPSPEPNVKISLVKSSIIKITPSNQLYKTNENGRANLGVLN
IHAPRGEHMLQLKATYNKTILDCPVIKLNVLPDPDKPVLLNVKYDKKAAFAAGSTFPDFM
ISVISEDGNIIKNVNPGRISMKIWEGGSSETRLSNATTCGCTKTKDDKDEGFFYFRDKMV
PEQVGIYSIQFAFAFDKMNILSSEQIIVEVVPNEPAQLMPASLPDTPVVSNDDSVASRTL
VKDLSLIIMDKYKNCTGNDLDGKIVAKIKSSTGKDADIPLFQGKTSTVEFPFHKGIVEIE
ALVLAENSPGRDSTEYILVFEPVIPTLKKYLEPYCLQFMFYNDFKRQQQMATLTKQRDNL
AQSIDVYRKWFDAANRLLSEIKCQAQEAETKEAHLKAELEKKQIEIPQINAIQYVDSLLK
KNISEQEEIKKQPRRTCAIANYPKGSQDVLGKVAHLAQIEENEAAKVISWHLASDMDCVI
TRTTAAARRIFDETQGRQQVLPLESIYKKNLPDWNRTLPHLRNGRNCFDPLGNPVFARDL
LTFPEHQESCQTVFGLILGDTIIVDNLDAANHYRNEVVKIAYCPTLLTREGDRIRSNGKF
GGLQNKAPPMDKLRGMVFGAPLPARYYSLSKQIELLQQYHTAVVRLNKVRAELEIQERSL
NTPEIQKKKEEFAEKERNLKLIEEKIGMTPTGRCSKSPLRSEGLDVNDSPSPPKRVRREI
VKKLHSSEELVSAPLTKRQQQTTTVTSEVNGSSRKKKT
NT seq
6057 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggggagggacggcgccagcaacatcctgactgtcttcgtgtacgatcggagg
caggatgtgtcggacgacagcgagaaaacccttaactgccatgagggaagctatgagggt
ttccgcagcgccgtgtgccaggcatttggcatttcttcagatgaagcatttgttatcaca
acaactagcagaaaacagatcaccagtgaaaactttggtggaattgttcaagacaggatg
actttctacttgctacagtcagttgatcaatcactcccctctgcaacaaaggagcgtatt
gatttcctaccacattatgatacacttgtgaaaagtggaatgtatgaatattatgctagt
gaagggcaaaatcctctaccattcgcacttgcagaattaattgataactctttatcagct
acttctcaaaatactggaattcgaagcatacagttaaagctgttatttgatgatgcccag
ggaaagccagctgttgctgttatcgataatggaagaggcatgacttctaaacagcttaat
aattgggctgtgtatcggttgtcaaaattcacacgacatggtgacactgaaagtgatcat
tcaggatatgtacggcctgcttccgtacctcgcagtttaaacagcgacatatcatatttt
ggagtcggcggaaaacaagcagcattttttgttgggcagtcagccagaatgataagcaag
cctgcagatgctcaagacgttcatgaacttgtcctttctaaagaagattttgaaaataaa
gagagaaataaagaagctatatacagtggatacattagaaacagaaagccatctgactct
tcccatattgttaatgatgatgaacgattcctgctcaatgttatcatggaagaaaagaac
aaagaaagtttcactacagttgttattaccggggtgcaaccagatcatgtgcagtactta
agaaacaacttttaccattggacaaggcaactggcacacatatatcattactatatacat
ggaccaaaaggaaatgaaaataactctccagtgaaggaattgggagctttcaacagtatt
gatattgagatttcaatgtttgaaaaaggaaagatacccaagactttgaatcttagagaa
atcaaagatgatatgcaaactttatatataaatacagctgctgatagttttgagtttaag
gctcaagtcgaaggagaaggtgtagtggaaggcattattcgttaccatcctttcttgtat
gataaagaaacctatcccgaagatccttgctttccttcaaggttaaaagaagaagatgat
gataatgaagatgaatgttttttaatagaaaagggaggcagaggaaagagacctattttt
gaatgtttttggaatggaagattaataccctacacaactgtggaagtttttgagtggtgt
ggttttcccaagaaaagagggcttgtcccattcgaatgttacaacagaatttctggagta
ttatttacaaatgataaatttcaggtcagcacaaacaagctgactttcatggatttggag
ctaaagttaaaagacaaggatacactttttaccagagttgtcaatggacaggagcagaga
atgaaaattgacagagaatttacattgtggctcaaagactgccatgaaaaatatgacaaa
cagataaaattcactctttttaaaggaataattacgcgcactgatcagccttcaaaaaga
atgcagagtccttgggcaacatactcagcaatagaatgggatggaaaaacatataaaact
gggcagctgataaaaacaattaaaacagttcgaatattccatggaagtatacagaatttt
tttttatatggagatcatgatggtgatgtgtatgctactgggggagaagttcagatagct
ttggaacctcaggcattgtatgatgaaaaaaagattattccaatatgcaaacttgatcgt
tcagcatcggacaaagcagtgaagaagtatattgaggaggaaatggcaaagcttcctgat
aagttgtcggtaacatggcctgaaggagatgaattgtcaccgaatgaaaccagatatgca
gggactactataggtgcattaagaattgaaatagtgaataaaaagggggaagccatgcaa
aaacttcctggtgcaagtcatgggggatcaaagaaactacttgtggaactcaaggttatt
ttacattcctctgatggagataaggaaataatttctcatatcagtcaacatgggggtaaa
tggccttactggttcaaaaaaatggaaactattaataaacttggaagctacactctgaaa
ctacaagttgtgttgaatgaaagtaatgcagacacttatgctggaagacctcttccatct
aaaatatttaaatttaatataatagcgggaaagcctcagaagttttcaataggtcttttg
gatcccccattttgtgttggaattccattcagtatcccattaagcgtgcaggatgaattt
ggccatgatgcttacctgacagatgatattgtaccacaacttgaggctagtggtttaaca
ttaacgtatgaagaaatagatagaggaccagactatgttataaaaggtgttcttgctaaa
ggtctagtgaacaactaccagggcaagaactttaacttgaaagttactcttcctggtttg
agggaagaaacacaggttttgagaattaaacttcacccaggccctcctcgacggctaaac
gtcagaccagattccaacatctttaaaattgaaaatggaacaccagtctcttttcagatt
gaagtgctggatgaagtaggaaacataacagcacaaccaaaacttattgttcattgcaag
ttttcaggtgctccagaccttcctatatattctgtggattgcagcagtggtgggttgaat
atcttaactggaccatttctgcatgtaaaaaatataaagaaagaccagacacttaaagca
aagatcgaaatacctagttgcaaagatgtgccaccagtggaaaagactattaaattgctt
cccagcagtcgtgttgcaaaactacaggtttttagtatggaaggggaaaaagctactcag
atcaaacaccaggacgaaattagctgggttgcaggtgacgtgatgcaaaatcttatgttc
caaatgtatgatgagattgaaaaagagataataataacaccagctttggctgaaaaaatt
aaggtaaattggactcccaagattagtaaagaacaactggttaaaggattgttgcctgat
gtaaaagtaccaacatctgtaaatgatgtacgctattgtcagattacatttcttgatgac
catgtatctttggaaagtgcatttatagtcaggccacttcctgatgaggcaaggcatatt
aaatgcaaactaaaaggatcaaacgtattacaaatgggtgaaaaactgcaagctgaaatt
gaggtaatgattaccgatcagcatggaaaccagattcagaacctggcatcatcttctgtg
agttccttggggatttctgggaatggactagataagacagatctgaaaattttttggcag
gcagatacacaaacgttctgtgttaaaggcatcaggttcaaaccaggtcatcctggaatc
aaagaactgtgttttggttggcatgaattttctcacttcttgagattaaacatgattgca
ggacctccagcaaaattgattcttatggattggatagatttaggggaatctgtgtcagtg
attaatggcaaagagctgccaaaacctcttatagtccagctctgtgatcagtgggacaac
ccatctcctgaaccaaatgtcaaaatcagccttgttaagtcaagcatcataaagatcact
ccttcaaatcagctgtataaaacaaatgaaaatggtagagcaaatttgggagttcttaac
attcatgctcctagaggagagcatatgctgcagcttaaagcaacatacaacaagactatc
ttagattgtccagtaattaagttaaacgttcttcctgacccggataaacctgtgctcttg
aatgtcaagtatgacaagaaagctgcctttgcagctggaagtacctttcctgatttcatg
atcagtgttatttctgaagatggtaacattattaaaaatgtaaatcctggaagaatttct
atgaaaatatgggaaggaggcagtagtgaaacccgattatcaaatgctacaacatgtggc
tgtaccaaaactaaggatgataaggatgaaggttttttttacttcagggacaaaatggtt
ccagagcaagtgggcatatacagcatccagtttgcttttgcctttgacaaaatgaacata
cttagcagcgaacagattatagttgaagtagtgcctaatgaaccagcgcagttgatgcca
gcatctttgccagatacccctgtagtctctaatgatgactctgttgccagtcggaccctt
gtcaaggacttgagcctcattataatggataaatacaaaaactgtactgggaatgactta
gatggaaaaatcgtcgctaaaattaaaagttccactgggaaagatgcagacattccactg
tttcagggtaaaactagtacagtcgagtttccatttcacaaaggaattgttgaaattgag
gctcttgtgcttgcagaaaatagtccaggcagagatagtactgaatatattcttgtgttt
gagccagtcataccaactttgaaaaaatatttggaaccttactgccttcaatttatgttt
tacaatgattttaagaggcaacagcagatggcgacacttacaaaacagagagacaatcta
gctcaatctatagacgtctacaggaaatggtttgatgctgctaatcggcttctgtctgaa
ataaaatgtcaggctcaggaagctgaaacaaaagaagcccatctgaaggcagaactggaa
aaaaagcagattgagatacctcagataaatgctatacaatacgttgactctcttctgaaa
aagaatatttctgagcaggaagaaattaaaaagcaacccagaagaacatgtgcaattgcc
aactatcctaaaggcagccaagatgttttaggcaaggttgcacacttagcacagattgaa
gagaatgaagcagcaaaggttatctcatggcatttggcaagtgacatggactgtgtaatc
actcggacaactgctgccgctcgtcgtatctttgatgaaactcagggccggcagcaggta
ttgcctcttgaatctatttacaagaagaatcttccagactggaacaggactttacctcac
ttacgaaatggtaggaactgtttcgatcctcttggaaatccagtgtttgccagagacctg
ctaacatttccagaacaccaagaaagctgccagacagtgtttggattgatcttaggagac
accattattgttgacaatttggatgctgccaatcattacagaaacgaggttgttaaaatt
gcttattgcccaactttgctgacaagagaaggagacagaattcgcagcaatggaaaattt
ggaggccttcagaataaagctcctcccatggataaacttaggggaatggtatttggagca
cctctgccagcacgttactacagtctctccaaacagatagaactccttcagcagtaccac
acagcagttgtcagacttaataaagtgagagcagaacttgaaatacaagagcggtcatta
aatactccagaaatacaaaaaaagaaggaagaatttgctgagaaagaaaggaatctcaag
ctaatagaggagaaaataggtatgaccccaacaggtcgatgcagcaaatcaccacttcga
tcagaagggctcgacgtgaatgacagtcccagtcctccaaaaagagtgcggagagaaata
gtgaaaaagttgcacagttcagaagaattggtctcagctcctctcacaaagagacagcag
caaaccacaactgttacatctgaagttaatggatcatctagaaaaaagaaaacctag
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integrated database retrieval system
