Geobacillus genomosp. 3: M493_01770
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Entry
M493_01770 CDS
T02798
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gjf
Geobacillus genomosp. 3
Pathway
gjf03030
DNA replication
gjf03410
Base excision repair
gjf03420
Nucleotide excision repair
gjf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M493_01770
03410 Base excision repair
M493_01770
03420 Nucleotide excision repair
M493_01770
03430 Mismatch repair
M493_01770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gjf03032
]
M493_01770
03400 DNA repair and recombination proteins [BR:
gjf03400
]
M493_01770
Enzymes [BR:
gjf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M493_01770
DNA replication proteins [BR:
gjf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M493_01770
DNA repair and recombination proteins [BR:
gjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M493_01770
NER (nucleotide excision repair)
GGR (global genome repair) factors
M493_01770
MMR (mismatch excision repair)
DNA ligase
M493_01770
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M493_01770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AGT30690
UniProt:
S5Z908
LinkDB
All DBs
Position
277403..279415
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELVAIEEQYPDLKTGDSP
TQRIGGPPLEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVRQEVDEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLTEPVSLEARGEAFMPKASFLRL
NEEREARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIASHSGALDY
LQALGFKVNPERRRCANIDEVIAFINEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAK
SPRWAIAYKFPAEEVVTTLLGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVTIKKAGDIIPEVVGVVVDRRDGDETPFTMPTHCPECESELVRLEGEVALR
CLNPNCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVRDVADLYCLTKEQLIGLE
RMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEEL
MAVPEIGEKMADAITAFFAQPEAVELLNELRAYGVNMAYKGPKRAAEAPVDSAFAGKTVV
LTGKLAAMSRNEAKQQIEQLGGRVTGSVSRSTDLVIAGEDAGSKLEKARQLGIEVWDETR
FLQEISRGER
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccgccaacaagccgaacggcgcgcggccgagctgcgcgaactgttaaaccgctac
gggtacgaatattatgtgcttgaccgcccatccgttccggatgccgagtatgatcggctt
atgcaggaacttgtcgccattgaggaacagtatccggacttgaaaacaggcgattcgccg
actcagcgcatcggcggcccgccgcttgaggcgtttcgcaaggtgacgcatcgcgttcca
atgatgagcctggccaacgcatttaacgagggtgacttgcgcgattttgaccgccgcgtc
cgccaggaagttgacgaggcggcgtatgtgtgcgaattgaaaatcgacggcctcgccgtc
tcggtccgctatgaggacggctatttcgtccaaggggcgacgcgcggtgacgggacgacg
ggcgaagacattacggaaaatttgaaaacgatccgctcgctgccgctgcggctgacagaa
ccggtgtcgcttgaagcgcgcggcgaggcgtttatgccgaaagcatcgtttttgcgcttg
aacgaggagcgggaggcgcgcggtgaggaattgttcgccaatccgcgcaacgcggcggcc
ggctcgctccgccagttggatccaaaagtggcggcgtcgcgccagctggatttgtttgta
tacggcttagccgacgccgaggcgctcggcatcgcttcacacagcggggcgcttgattat
ttgcaggcgctcggctttaaagtgaacccggagcggcggcgctgcgccaatatcgatgag
gtgatcgcttttatcaacgagtggcatgacaagcggccgcagcttccgtatgagattgac
ggcatcgtcattaaggtcgattcattcgcccaacaacgagcgcttggcgcgacagcgaaa
agcccgcgctgggcgatcgcctacaagttcccggccgaagaggtcgttacgacgttgctc
ggcattgaggtgaacgtcggccgcaccggtgtcgtcactccgacggcgattttagagccg
gtccgcgtcgccggcacgacggtgcagcgcgccactcttcacaatgaagactttattcgc
gaaaaagatatccggattggcgacgctgtcacgatcaaaaaagcaggcgacattattcct
gaagtcgtcggcgtcgtcgttgaccggcgcgacggggacgaaacgccgtttacgatgccg
acgcactgcccggaatgcgaaagcgagctcgtccgtctcgagggggaagtggcgctccgc
tgcttgaacccgaactgcccggcccagctgcgcgagcggctcatccattttgcctcaaga
gcagcgatgaatatcgagggcctgggcgaaaaagtcgtcacccagctgtttaacgccggc
cttgtccgtgatgtcgccgatttgtactgcctgacgaaggaacagcttatcgggttggaa
cggatgggggaaaagtcggcggccaacttgcttgcggcgattgaggcgtcgaagcaaaat
tcacttgaacggctgctgtttggccttggcatccgctacgtcggagcgaaagcagcccaa
ctgcttgccgagcattttgaaacgatggagcggctcgaacgggcgacgaaagaggagttg
atggccgtccccgaaatcggggagaagatggcggatgcgatcacggcgttcttcgcccaa
ccggaagcggtcgaactgctcaatgaactgcgcgcctacggggttaatatggcgtacaaa
ggaccgaagcgggcggcggaagcgccggttgattcggcattcgccggcaaaacggtcgtt
ttgaccggcaaacttgccgcgatgtcgcgcaatgaggcgaaacaacagatcgagcagctt
ggcgggcgcgtcaccggcagcgtcagccgcagtactgaccttgtcatcgccggcgaggat
gccggatcgaagcttgagaaagcgcggcaacttggcattgaagtgtgggacgaaacacga
tttttgcaagagataagcaggggggaacgatga
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integrated database retrieval system
