Gallaecimonas kandeliae: PVT67_11425
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Entry
PVT67_11425 CDS
T09225
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gkn
Gallaecimonas kandeliae
Pathway
gkn03030
DNA replication
gkn03410
Base excision repair
gkn03420
Nucleotide excision repair
gkn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVT67_11425 (ligA)
03410 Base excision repair
PVT67_11425 (ligA)
03420 Nucleotide excision repair
PVT67_11425 (ligA)
03430 Mismatch repair
PVT67_11425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gkn03032
]
PVT67_11425 (ligA)
03400 DNA repair and recombination proteins [BR:
gkn03400
]
PVT67_11425 (ligA)
Enzymes [BR:
gkn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PVT67_11425 (ligA)
DNA replication proteins [BR:
gkn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PVT67_11425 (ligA)
DNA repair and recombination proteins [BR:
gkn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PVT67_11425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PVT67_11425 (ligA)
MMR (mismatch excision repair)
DNA ligase
PVT67_11425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PVT67_11425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
DZR_2
CARF_Card1
zf_CopZ
Motif
Other DBs
NCBI-ProteinID:
WKE67481
LinkDB
All DBs
Position
complement(2301662..2304007)
Genome browser
AA seq
781 aa
AA seq
DB search
MSDIQNQLEQLRRQIDEHNYRYYVEDAPSIPDAEYDRLLRELQALEEAHPDLVTPESPTQ
RVGARPASAFGEVAHEVPMLSLGNAMTPDEFQAFAERVEKGLGRAAAWCCEPKLDGLAVS
LLYENGVLVRGATRGDGSTGEDITQNVRTVRAIPLKLRGDFPARLEVRGEVFMSKSGFEA
MNQKALETGDKLFANPRNAAAGSLRQLDSRITAKRPLAFYAYGLGVVEGAALPASQFGRL
QWLKTLGLPVSQEVQQRTSLAEVEAYHAQLLAKRNDLDFDIDGAVIKVDAVADQDELGFV
SRAPRWAIAWKYPAQEELTVLEDVEFQVGRTGAITPVAKLKPVFVGGVTVSNATLHNADE
IARLGVKIGDTVIIRRAGDVIPQVVSVVEERRPLDARDIQFPARCPVCGAHVERETLKTH
LKTRVIEREGTAYRCSGRLTCSAQLKQALIHFASRKALDIEGLGDVVVEKLVDAGLVASP
VDIFTLSREAILGLEGFAELSTDKLRAAILRSKATPFARVLYGLGIPEVGEETAKLVAAK
MGNVDNIRLAPLELLTSIPDVGREVAFHISEFFVEANNWRVVDGLRSQGLNFGEPDAKVA
LAPLSFADFINKLDIVGVGPGAAEKAAARFESLEQLIKTAEDEQDLFNALGGTKAAAKGL
FSFFADAANRDHALEIERRLLALEVHWTSERELVEEGGLPLSGQTFVITGTLSVLSRDEA
KAHLEALGAKVAGSVSKNTDVLVAGEKAGSKLAKAESLGVAVWDDNALMAFLREQGVTDA
Q
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatccagaaccagctagagcagcttcgccgccaaatcgacgagcacaactac
cgctactacgtggaggatgctcccagcatccccgacgccgaatacgaccgcctgctccgt
gagctgcaggccctcgaagaggcccacccggatctggtcacccccgagtcccccacccag
cgggtcggggccaggccggccagcgccttcggcgaggtggcccacgaggtgcccatgctt
tccttgggcaacgccatgaccccggacgagttccaggcctttgccgagcgggtggaaaag
ggcctgggccgggccgccgcctggtgctgcgagcccaagctggacggcctggcggtgagc
ctcctctatgaaaacggcgtcctggtgcggggcgccacccgcggcgacggcagcaccggc
gaggacatcacccagaacgtgcgcacggtgcgggccatacccttgaagctgcggggcgac
ttcccggcccgcctggaagtgcggggcgaagtcttcatgtccaaatccggtttcgaggcc
atgaaccagaaggcgttggaaacaggcgacaagctgttcgcgaacccccgcaacgccgcc
gccggctccctgcgccagctcgactcgcgcattaccgccaagcggcccctggctttctac
gcctatggcctgggggtggtggaaggggccgcgctgccggccagccagtttggccgcctg
cagtggctcaaaaccctgggcctgccggtttcccaggaggtgcagcagcgcaccagcctg
gcagaggtcgaggcctaccatgcccagctgctggccaagcgcaacgatctcgatttcgac
atcgacggcgccgtcatcaaggtggacgccgtcgccgaccaggacgaactgggcttcgtc
tcccgggcgccgcgctgggccatcgcctggaaatacccggcccaggaagaactcaccgtc
ctcgaagacgtggagttccaggtgggccgcaccggcgccatcaccccggtcgccaagctc
aaacccgtgttcgtcggcggcgtcaccgtgtccaacgccaccctgcacaacgccgacgag
atagcgcgcctcggggtcaagattggtgacaccgtcatcatccgccgcgccggcgacgtc
ataccccaggtggtgtcggtggtggaagagcgccgccccttggatgcccgcgacatccag
ttcccggcccgctgccccgtctgcggcgcccatgtggagcgggaaaccttgaagacccac
ctcaagacccgcgtcatagagcgcgaaggcaccgcctaccgctgctcaggccgcctgacc
tgctcggcccagctcaagcaggcccttatccatttcgcctcccgcaaggccctggacatc
gagggcctcggggacgtggtggtggaaaaactggtggacgccggcctggtggcaagcccc
gtggatatcttcaccctgagccgcgaggccatcctggggctggaaggcttcgccgagctg
tccaccgacaagctgcgcgccgccatattgcgtagcaaggccacccccttcgcccgggtg
ctctacggcctcggcatccccgaagtgggggaggagaccgccaagctggtggccgccaag
atgggcaatgtcgacaacatccgcctggcgcccctggaactcttgaccagcatcccggac
gtgggccgggaagtggccttccacatcagcgagttcttcgttgaagccaacaactggcgg
gtggtggacgggctgcgcagccagggccttaattttggcgagccggatgccaaggtggcc
ctggcgcccctgagctttgccgacttcatcaacaagctggatatcgtcggcgtgggcccg
ggggcggcggaaaaggccgccgcccgattcgaaagcctggagcagctcatcaaaacggcc
gaggacgagcaggatctcttcaacgccctggggggcaccaaggccgcggccaagggcctc
ttcagcttctttgccgacgccgccaaccgcgaccacgccctggagatagagcggcgcctg
ctggcgctcgaggtgcactggacctctgagagggaactggtggaggagggcggcctgccc
ctgtccggccagacctttgtcatcaccggcaccctgtcggtgctgtcccgtgatgaggcc
aaggcgcacttggaagccctgggggccaaggtggcgggctcggtgtccaagaacacagac
gtgctggtggccggcgagaaggccggctccaagctggccaaggccgaaagcctgggggtc
gctgtctgggacgacaacgccttgatggccttcctgcgcgaacagggggtgaccgatgct
caataa
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