Geobacillus lituanicus: GLN3_11845
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Entry
GLN3_11845 CDS
T05193
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gli
Geobacillus lituanicus
Pathway
gli03030
DNA replication
gli03410
Base excision repair
gli03420
Nucleotide excision repair
gli03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GLN3_11845 (ligA)
03410 Base excision repair
GLN3_11845 (ligA)
03420 Nucleotide excision repair
GLN3_11845 (ligA)
03430 Mismatch repair
GLN3_11845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gli03032
]
GLN3_11845 (ligA)
03400 DNA repair and recombination proteins [BR:
gli03400
]
GLN3_11845 (ligA)
Enzymes [BR:
gli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GLN3_11845 (ligA)
DNA replication proteins [BR:
gli03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GLN3_11845 (ligA)
DNA repair and recombination proteins [BR:
gli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GLN3_11845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GLN3_11845 (ligA)
MMR (mismatch excision repair)
DNA ligase
GLN3_11845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GLN3_11845 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
HHH_3
F55H2_N
DUF3701
Peptidase_inhib_put
Motif
Other DBs
NCBI-ProteinID:
ASS87673
LinkDB
All DBs
Position
2372978..2374990
Genome browser
AA seq
670 aa
AA seq
DB search
MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSP
TQRIGGPPLEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVRQEVGEAAYVCELKIDGLAV
SVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKEPVSLEARGEAFMPKASFLRL
NEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIASHSEALDY
LQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAK
SPRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIR
EKDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTHCPECESELVRLEGEVALR
CLNPNCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVRDVADLYCLTKEQLVGLE
RMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEEL
MAVPEIGEKMADAITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEASADSAFAGKTVV
LTGKLASMSRNEVKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDESR
FLQEINRGKR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaccgccaacaagccgaacggcgcgcggccgagctgcgcgaactgttgaaccgctac
gggtacgaatattatgtgcttgaccgcccgtctgttccagatgccgagtatgaccggttg
atgcaagagctcatcgccattgaggaacaatatccggagctcaaaacgagcgattcgccg
acccagcgcatcggcggtccgccccttgaggcgtttcgcaaagtggcgcatcgcgttccg
atgatgagcttggcgaacgcgtttggcgaaggagacttgcgcgattttgaccgccgcgtc
cgtcaggaagtcggggaagcggcgtacgtatgcgagctgaaaatcgacggcctcgccgtc
tcggtccgctatgaagacggctatttcgtccaaggggcgacgcgcggcgacgggacgacg
ggtgaagacattacggaaaatttgaaaacgatccgctcgctgcctctccgtctgaaagaa
ccggtgtcgcttgaagcgcgcggcgaggcgtttatgccgaaagcgtcgtttttgcgcttg
aatgaggagcgaaaagcccgcggcgaggagctgtttgccaacccgcgcaacgccgcggct
ggctcgctccgccagctcgacccgaaagtggcggcctcgcgtcagctggatttgtttgta
tatggcttagccgacgccgaggcgctcggcatcgcttcacacagcgaagcgcttgattat
ttgcaggcgctcgggtttaaagtaaacccagagcgacggcgctgtgccaatatcgatgag
gtgatcgcctttgtcagcgagtggcacgacaagcggccgcagctgccgtatgagattgac
ggcatcgttattaaggtggactcattcgcccagcaacgggcgcttggcgcgacggcgaaa
agcccgcgctgggcgattgcctacaagttcccagccgaggaagtggtgacgacgttaatc
ggcattgaggtgaacgtcggccgcacgggtgtcgtcacgccgacggcgattttagagccg
gtgcgcgtcgccggcacgacggtgcagcgcgccacccttcacaatgaagattttatacgg
gaaaaagacattcgcatcggcgatgcggtcatcattaaaaaagcgggcgacatcatcccg
gaagtggtcggcgtcgtcgttgaccggcgcgatggggatgaaacgccgtttgcgatgccg
acgcactgcccggaatgcgaaagcgagctcgtccgtctcgagggggaagtggcgctccgc
tgcttgaacccgaactgcccggcccagctgcgcgagcggctcatccattttgcctcaagg
gcggcgatgaacatcgagggtttgggcgaaaaagtcgtcacccagctgtttaacgccggc
cttgtccgcgatgtcgccgatttgtactgcctgacgaaggaacagcttgtcgggttggaa
cggatgggggaaaagtcggcggccaacttgcttgcggcgattgaggcgtcgaagcaaaac
tcgcttgaacggctgctgtttggccttggcattcgctacgtcggagcgaaagccgcccaa
cttttggctgagcattttgaaacgatggagcggctcgaacgggcgacgaaagaggagttg
atggccgtccccgaaatcggagagaaaatggcggatgcgatcacggcgttcttcgcccaa
cccgaagcaactgagctgctccaggagctgcgcgcttacggtgtcaatatggcttacaaa
gggccgaagcggtcggctgaagcgtctgctgactctgccttcgccggcaaaacggtcgtc
ttgaccggcaagctcgcgtcgatgtcgcgcaatgaagtaaaagaacaaattgagcggctt
ggcgggcgcgtcaccggcagcgtcagccgcagcactgaccttgtcatcgccggcgaggat
gccggatcgaagctggagaaagcccagcagcttggcattgagatttgggacgaatcacga
tttttgcaagagatcaacagggggaaacgatga
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integrated database retrieval system
