Trichlorobacter lovleyi: Glov_2927
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Entry
Glov_2927 CDS
T00708
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
glo
Trichlorobacter lovleyi
Pathway
glo03030
DNA replication
glo03410
Base excision repair
glo03420
Nucleotide excision repair
glo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
glo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Glov_2927
03410 Base excision repair
Glov_2927
03420 Nucleotide excision repair
Glov_2927
03430 Mismatch repair
Glov_2927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
glo03032
]
Glov_2927
03400 DNA repair and recombination proteins [BR:
glo03400
]
Glov_2927
Enzymes [BR:
glo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Glov_2927
DNA replication proteins [BR:
glo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Glov_2927
DNA repair and recombination proteins [BR:
glo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Glov_2927
NER (nucleotide excision repair)
GGR (global genome repair) factors
Glov_2927
MMR (mismatch excision repair)
DNA ligase
Glov_2927
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Glov_2927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
5_3_exonuc
E1-E2_ATPase
Motif
Other DBs
NCBI-ProteinID:
ACD96634
UniProt:
B3E8F8
LinkDB
All DBs
Position
complement(3141676..3143727)
Genome browser
AA seq
683 aa
AA seq
DB search
MQQLSLLDSVVIPDTAQLRAAELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAA
RPDLLTPDSPTLRVGGKPLARFSQVRHRMPMLSLENAMQEDEIRGFEQRIRSLLALPDTV
ALQYQCEPKMDGLAVELVYQDGLLVQASTRGDGEVGEEVTANIRTVRNVPLRLTGDNLPA
LLEVRGEVYLPLAAFQQLNQQREEAGEPPFANPRNAAAGSIRQLDPAVVARRPLAMVCYG
VGVMETEARTQTELMSQLAAWGLPVSDQARQVSGIEGAIACFQDLQERRDSLLYEIDGMV
IKVDDLRLQQELGEKSRSPRWAIACKFPPRQATTRINEIILSVGRTGVITPVASLEPVEL
SGVTVSRATLHNWDEIRRKDIRVGDRVIVERAGDVIPAVVKVLLDKRSGTEQELPEPETC
PVCGSRAAREAGEVAVRCQGGLACPPQLAESIIHFASRDAMDIDGLGSKYIEQLISLGLV
KDIADLYRLTRDDFMQFERMGDKLAENLLAAIASSKQQELSRFIFALGIRHVGERTARTL
AERFGSIDNLQTATLEELTSIRDVGPAVAISIRSFFDAPANQTVLQRLKAAGVAPTVEEK
RVGGRLAGLTFVFTGTLATLGRDEAKKLVEAEGGNVTGSVSKKTDYVVAGSEAGSKLEKA
RNLGITVLSEDAFSKLLATGGNQ
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaactttccctgttagattctgttgttattcctgacacagcccaactgcgggca
gcagagttgcgtcggctgctggaacatcacaaccgttgttactacgaactggatagcccc
gagatcagcgatgccgagtatgatgccctgtttcgtgagctgcaggtgatcgaggcagcg
cgcccggacctgctgactcctgattcgcctaccctgcgggtggggggcaaacccctggcc
cgtttcagtcaggtccggcaccggatgccgatgctttcgctggaaaatgccatgcaggag
gatgaaatccgcggttttgaacagcgtatccgtagcctgctggcactgcctgataccgtt
gcgctgcaatatcagtgtgagccgaagatggatggactggccgtggagctggtctatcag
gatggcctgctggtgcaggcctcaacccgtggggatggcgaggtcggtgaagaggtgacc
gccaacatccgtacagtccgcaatgtgccgttgcgtctgaccggggacaatctgcctgcc
ctgcttgaggtgcgtggcgaggtctacctgccgctggccgcctttcaacagttgaaccag
cagcgtgaagaagcgggggaaccgccgtttgccaacccccgtaatgcggctgccggttcc
atccgtcagcttgatcccgcagtggtggccagacgtccgctggccatggtctgttatggg
gtaggggtgatggaaacagaggccaggacacaaacggaactgatgagccaacttgcagcc
tgggggctgccggtcagtgatcaggcccgacaggtcagcggtattgaaggtgcgattgcc
tgttttcaggatctgcaagagcggcgcgactccctgctgtacgagatcgacggtatggtg
atcaaggtggatgacctgcgcctgcagcaggagctgggggaaaagagccggtcaccccgc
tgggccatcgcctgcaagttccccccccgccaggcaactacccggatcaacgagatcatc
ctttcagtgggcaggaccggcgtgatcacgccggtggccagtctggaaccggtggagctg
tccggtgtcacggtttcgcgagccaccctgcacaactgggacgagatccggcgcaaggat
atccgggtgggtgaccgggtgattgtggagcgggcaggggatgtaatcccggcggtggtc
aaggtgctgcttgataagcgtagcggtacagagcaggaactgccggagccggaaacctgt
ccggtctgtggttccagggcggcccgtgaagcaggggaggtggcggtgcgttgtcagggc
gggttggcctgtccgccccagctggcagaatcgatcatccattttgcctcccgtgatgcc
atggatattgacgggctggggagcaaatatatcgagcagctgatcagcctggggctggtc
aaagatattgccgatctctaccgcttgacccgtgatgacttcatgcagtttgagcggatg
ggggacaagctggcggaaaacctgctggctgccattgcctccagtaaacagcaggaactg
tcccgcttcatctttgccctggggatccggcatgtgggagagcggactgccaggactctg
gcagagcggtttggcagtatcgataacctgcagactgccaccctggaagaactgaccagt
atccgcgatgtcggcccggctgtggcgatcagtatccgctccttttttgatgccccggcc
aaccagacggtactgcagcggctcaaagcggccggtgttgcgccaacagtggaggaaaaa
cgggttggcggccggctggccggtcttacctttgtctttaccgggacactggctaccctg
gggcgtgatgaggccaaaaaactggttgaagcggaggggggcaatgtgaccggctcagtc
tcaaaaaagaccgattatgtggtggcgggcagtgaggcgggcagcaaactggaaaaagcc
cgcaatctgggtataacggtgctttcagaggatgcattttcaaaattgctggccacagga
ggcaaccaatga
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